Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4b18
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0873 - 32372143-32372287,32372678-32372754,32372863-323730... 99 2e-21
07_03_1385 + 26189034-26189294,26189427-26189636,26191016-261910... 79 3e-15
03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312 70 2e-12
09_04_0359 + 16941904-16942110,16943636-16943785,16944084-169442... 68 6e-12
09_04_0676 - 19383757-19383890,19384308-19384415,19384493-193846... 36 0.041
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767... 32 0.38
06_03_1058 + 27254195-27254382,27255041-27255116,27255254-272554... 30 1.5
03_05_1132 - 30609569-30609721,30610113-30610204,30610302-306104... 30 1.5
04_01_0500 - 6540769-6541482,6541819-6541877,6541965-6542064,654... 29 2.7
12_01_0223 + 1708420-1708512,1708790-1709008,1709117-1709330,170... 28 6.2
01_05_0184 + 19005991-19006129,19006523-19006692,19007408-19007659 28 6.2
11_03_0177 + 11269754-11270320,11271701-11272180,11272663-112732... 28 8.2
09_04_0640 - 19166953-19167285,19167631-19168449,19169057-191691... 28 8.2
05_03_0387 + 13396158-13396271,13396390-13396434,13397004-133976... 28 8.2
03_03_0258 - 15905847-15905990,15906088-15906244,15906374-159065... 28 8.2
>02_05_0873 -
32372143-32372287,32372678-32372754,32372863-32373072,
32374645-32374869
Length = 218
Score = 99 bits (238), Expect = 2e-21
Identities = 60/208 (28%), Positives = 105/208 (50%)
Frame = +2
Query: 71 MELIKLSSLLVIALLADCASALYFHIAEGERKCFIEEIPDDTTVIVNYKVELYDPKSGGF 250
+ L ++++ A L CA A++ + + KC EEI + V+ +Y + +Y+
Sbjct: 11 LTLAVAAAVIAAACLLLCAEAVWLDLPQSGTKCVSEEIQSNVVVLADYAL-MYESHPSSH 69
Query: 251 MQTTPGIGMHVEVRDPNDRILLSRVYSLEGMISFTSSTPGEHVICMYSNSTSWFSGSQLR 430
P I V+V P L + G +FT+S G ++ C + +S GS +
Sbjct: 70 ----PTIA--VKVTSPYGNTLHHNENATVGQFAFTTSEAGNYLACFWIDSAE--KGSGIS 121
Query: 431 VHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSES 610
++LD ++G A D+ +A+KEK+ ++L +R+L V I + Y + RE R SE
Sbjct: 122 INLDWKIGIAAKDWDVIAKKEKIEGVELELRKLEVAVQSIHQNMIYLKAREAEMRTVSEK 181
Query: 611 TNQRVLWWSLLQTGVLVIIGYWQMRHLK 694
TN RV W+S+L V +++ Q+ HL+
Sbjct: 182 TNARVAWFSILSLSVCIVVSILQLWHLQ 209
>07_03_1385 +
26189034-26189294,26189427-26189636,26191016-26191092,
26191196-26191340
Length = 230
Score = 79.0 bits (186), Expect = 3e-15
Identities = 52/202 (25%), Positives = 97/202 (48%), Gaps = 1/202 (0%)
Frame = +2
Query: 95 LLVIALLADCASALYFHIAEGERKCFIEEIPDDTTVIVNYKVELYDPK-SGGFMQTTPGI 271
LL+++ A AL F + G KC +EI ++ V+ Y V DP + + I
Sbjct: 25 LLLLSAAPRTARALRFDLESGHTKCISDEIKVNSMVVGKYHVVGPDPNFPDNPLPDSHRI 84
Query: 272 GMHVEVRDPNDRILLSRVYSLEGMISFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDIQV 451
+ V N V S G +FT++ G+++ C ++ + D +
Sbjct: 85 SLRVTSPYGNSVHYAENVPS--GNFAFTATEAGDYLACFWAPDHK--PPVSIGFEFDWRS 140
Query: 452 GEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQRVLW 631
G A D++NVA+K ++ +++ +++L + + I +E Y R+REE + ++ TN R+ W
Sbjct: 141 GVAAKDWSNVAKKGQVDVMEMELKKLEETIKSIHEEMFYLREREEEMQNLNKQTNSRMAW 200
Query: 632 WSLLQTGVLVIIGYWQMRHLKS 697
L G+ + + Q+ HLK+
Sbjct: 201 LGFLSLGICLSVAGLQLWHLKT 222
>03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312
Length = 232
Score = 69.7 bits (163), Expect = 2e-12
Identities = 48/203 (23%), Positives = 91/203 (44%), Gaps = 12/203 (5%)
Frame = +2
Query: 125 ASALYFHIAEGERKCFIEEIPDDTTVIVNYKVELYDPKSGGFMQTTPGIGMHVEVRDPND 304
A+AL F + G KC ++I + Y V + P+ GG ++ + P
Sbjct: 26 AAALRFDLQSGHTKCISDDIKVGAMAVGKYHVVV--PEGGGSTSSSSSSSSSAQPLLPES 83
Query: 305 RILLSRVYS------------LEGMISFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDIQ 448
+ RV S G +FT+S G+++ C ++ + + D +
Sbjct: 84 HRVSLRVTSPYGNSLHYSENVQSGNFAFTASEAGDYLACFWAPDHR--PTATVGFEFDWR 141
Query: 449 VGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQRVL 628
G A D+ NVA+K ++ +++ +++L D ++ I +E Y R REE ++ + TN R+
Sbjct: 142 SGVSARDWTNVAKKGQVDMMEVELKKLEDTINSIHEEMFYLRAREEEMQELNRRTNSRMA 201
Query: 629 WWSLLQTGVLVIIGYWQMRHLKS 697
W + + + Q+ HLK+
Sbjct: 202 WLGFFSLAICLSVAGLQLWHLKN 224
>09_04_0359 +
16941904-16942110,16943636-16943785,16944084-16944293,
16944376-16944452,16944554-16944698
Length = 262
Score = 68.1 bits (159), Expect = 6e-12
Identities = 41/141 (29%), Positives = 71/141 (50%)
Frame = +2
Query: 272 GMHVEVRDPNDRILLSRVYSLEGMISFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDIQV 451
G +V P I+ + G SFT++ G ++ C ++ + ++++LD +V
Sbjct: 115 GTPAKVTSPFGDIVHHKQKVSTGQFSFTTAEAGNYLACFSADGRN--KRLVVKLNLDWRV 172
Query: 452 GEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQRVLW 631
G D+ +VA+KEKL ++L + +L V I + R +E R TSE TN R W
Sbjct: 173 GIATKDWDSVAKKEKLEGVELELVKLETSVQAIHENLLLLRSKEANMRDTSEKTNARATW 232
Query: 632 WSLLQTGVLVIIGYWQMRHLK 694
S++ V +I+ Q+ HL+
Sbjct: 233 LSIISLIVCIIVSVLQLWHLQ 253
>09_04_0676 -
19383757-19383890,19384308-19384415,19384493-19384679,
19384937-19385143
Length = 211
Score = 35.5 bits (78), Expect = 0.041
Identities = 42/195 (21%), Positives = 81/195 (41%), Gaps = 1/195 (0%)
Frame = +2
Query: 80 IKLSSLLVIALLADCASALYFHIAEGERKCFIEEIP-DDTTVIVNYKVELYDPKSGGFMQ 256
++L LLV+ +LA A +CF + + TV V++ V + +
Sbjct: 5 LRLGFLLVLCILAFLRPAAAIRFVIDREECFSHNVDYEGDTVHVSFVVIKAETP---WHY 61
Query: 257 TTPGIGMHVEVRDPNDRILLSRVYSLEGMISFTSSTPGEHVICMYSNSTSWFSGSQLRVH 436
T G+ + VRDPN + + F G H C ++N + + V
Sbjct: 62 TEDGVDL--VVRDPNGNQIHDSRDKISDKFEFIVHRRGVHRFC-FTNKSPYHE----TVD 114
Query: 437 LDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTN 616
D+ V H Y A+ E + L +I +L + ++ I EQ + + +R +E+ +
Sbjct: 115 FDVLV-SHFSYYDQHAKDEHFSALFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMS 173
Query: 617 QRVLWWSLLQTGVLV 661
+R + + ++ L+
Sbjct: 174 RRAVHKAFFESAALI 188
>03_03_0008 -
13674602-13674708,13675272-13675439,13676169-13676787,
13676868-13677330,13677855-13678036,13678093-13678235,
13678315-13678423,13679000-13679456,13680490-13682473,
13682507-13682626,13682920-13682971
Length = 1467
Score = 32.3 bits (70), Expect = 0.38
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +3
Query: 540 YTRSQRSRLTRGKEKSVSDKHQKAQTSG-CSGGVCYRQVSLSSSVT 674
YTRS+ S L R + S++ +KAQ SG SGG C V L++ T
Sbjct: 159 YTRSRVSSLRRSRS-SLNTDTRKAQDSGKLSGGTCLASVDLAADGT 203
>06_03_1058 +
27254195-27254382,27255041-27255116,27255254-27255418,
27255580-27255671,27255713-27255754,27256342-27256387,
27258456-27258683
Length = 278
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = +2
Query: 422 QLRVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQT 601
QL L Q GE D ++V+ ++L++LQL++ L +VH K++ +Q E+ R
Sbjct: 103 QLEASLRRQTGE---DLSSVSTVDELSQLQLQLESSLSKVH-ARKDELMSQQLEDMRRMV 158
Query: 602 SES 610
S
Sbjct: 159 HYS 161
>03_05_1132 -
30609569-30609721,30610113-30610204,30610302-30610428,
30610534-30610705,30610958-30611007,30611093-30611243,
30611353-30611479,30611885-30612071,30612245-30612398,
30612485-30612567,30613439-30613573
Length = 476
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = +3
Query: 519 LDSCWIKYTRSQRSRLTRGKEKSVSDKHQKAQTSGCSGGVCYRQVSLSSSV 671
+++C TR +++L+ GKE + K+ +S C G +CY + +L S +
Sbjct: 153 IEACSEFVTRYHQNQLSSGKE---AGKNLPMLSSACPGWICYAEKTLGSFI 200
>04_01_0500 -
6540769-6541482,6541819-6541877,6541965-6542064,
6542113-6542322,6542507-6542765,6544022-6544215
Length = 511
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +2
Query: 539 VHQITKEQAYQRQREERFRQTSESTNQRVLWWSLLQTGVL 658
+H+ ++Q Q+Q+++RF + N VLW S++ TGVL
Sbjct: 258 LHEQQQQQQQQQQQQQRFLIAVQ--NVLVLWDSVILTGVL 295
>12_01_0223 +
1708420-1708512,1708790-1709008,1709117-1709330,
1709901-1710001
Length = 208
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/62 (20%), Positives = 33/62 (53%)
Frame = +2
Query: 443 IQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQR 622
+ GEH + +N A ++ +E + +QL ++ + ++AY + E ++ E ++R
Sbjct: 66 VLTGEHKGEISNTADLDQSSEAKSDKKQLSEKDEMKSIQEAYAKAYYEAIQKRQEDEDKR 125
Query: 623 VL 628
++
Sbjct: 126 MI 127
>01_05_0184 + 19005991-19006129,19006523-19006692,19007408-19007659
Length = 186
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -3
Query: 618 WFVLSDVCRKRSSLCLW*A-CSFVIWCT 538
WF + ++C K +CL+ A C +W T
Sbjct: 155 WFSVPEICEKHQVICLYCASCMLDVWYT 182
>11_03_0177 + 11269754-11270320,11271701-11272180,11272663-11273292,
11273377-11273443,11273510-11273620,11273696-11275206
Length = 1121
Score = 27.9 bits (59), Expect = 8.2
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Frame = +2
Query: 386 MYSNSTSWFSGSQLRVHLDIQVGEHAVDYANVAQKE--KLTELQLRIRQLLDQVHQITKE 559
MYS + S + L VH D V EH + +V + + + L+ R+ LL + +K
Sbjct: 973 MYSFTNLAESINMLNVHDDNAVFEHKMRCISVLEADGFDVRHLRSRLETLLSLKNSWSKI 1032
Query: 560 QAYQRQREERFRQTSESTNQRVLWWSLL 643
Q ++ E++ Q QR S+L
Sbjct: 1033 QDMMKRSEKKIAQEEIDDQQRCAEISVL 1060
>09_04_0640 -
19166953-19167285,19167631-19168449,19169057-19169163,
19170070-19170154
Length = 447
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 136 VLPHSRRRTKMFYRRNT*RYHSYSKLQSR 222
V+P RRR + RRN RY S +KL R
Sbjct: 10 VMPTRRRRQRRRRRRNRHRYRSIAKLGKR 38
>05_03_0387 +
13396158-13396271,13396390-13396434,13397004-13397632,
13397727-13397874,13397971-13398147,13398527-13398595,
13398699-13398788,13399000-13399158,13399663-13399753,
13399917-13400008,13400009-13400233,13400394-13400585
Length = 676
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 535 IQQLSNPELKFCQFFLLCNICIVYSMLTNLNVKMNS 428
I L P + FFLL CIVY M T++++ NS
Sbjct: 432 ISLLREPMMLITGFFLLFMACIVY-MRTDMSISKNS 466
>03_03_0258 -
15905847-15905990,15906088-15906244,15906374-15906504,
15906991-15907126,15907193-15907464,15907874-15908169,
15908279-15908646,15908922-15908987,15909064-15909129,
15909226-15909297,15909391-15909459,15909549-15909620,
15909708-15909776,15909874-15909945,15910046-15910178,
15911223-15911361
Length = 753
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 396 LEYMHITCSPGVLDVN 349
LEYMH TCSP ++ N
Sbjct: 564 LEYMHETCSPSIIHKN 579
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,669,823
Number of Sequences: 37544
Number of extensions: 378568
Number of successful extensions: 1003
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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