Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4b18
(698 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117207-7|CAB60397.1| 211|Caenorhabditis elegans Hypothetical ... 298 3e-81
AC199170-2|ABO33261.1| 167|Caenorhabditis elegans Hypothetical ... 192 3e-49
Z74035-1|CAA98480.1| 204|Caenorhabditis elegans Hypothetical pr... 93 2e-19
AF039713-7|AAB96722.1| 203|Caenorhabditis elegans Hypothetical ... 73 2e-13
AF014940-5|AAB63937.1| 203|Caenorhabditis elegans Suppressor/en... 60 2e-09
Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical pr... 33 0.20
Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical pr... 33 0.20
X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy ch... 33 0.20
M37235-1|AAA28122.1| 273|Caenorhabditis elegans myosin II protein. 33 0.20
Z75540-4|CAA99849.1| 169|Caenorhabditis elegans Hypothetical pr... 29 3.2
AL132904-19|CAD91707.1| 371|Caenorhabditis elegans Hypothetical... 29 4.2
Z34802-3|CAA84333.1| 354|Caenorhabditis elegans Hypothetical pr... 28 5.6
U41542-2|AAR30212.1| 623|Caenorhabditis elegans Suppressor of p... 28 7.4
U41542-1|AAR30211.1| 684|Caenorhabditis elegans Suppressor of p... 28 7.4
>AL117207-7|CAB60397.1| 211|Caenorhabditis elegans Hypothetical
protein Y60A3A.9 protein.
Length = 211
Score = 298 bits (731), Expect = 3e-81
Identities = 137/200 (68%), Positives = 164/200 (82%)
Frame = +2
Query: 95 LLVIALLADCASALYFHIAEGERKCFIEEIPDDTTVIVNYKVELYDPKSGGFMQTTPGIG 274
L+ + LA A +LYFHIAE E+KCFIEEIPD+T V NYKV+LYDP + G+ P IG
Sbjct: 4 LIALLSLATYADSLYFHIAETEKKCFIEEIPDETMVTGNYKVQLYDPNTKGYGDY-PNIG 62
Query: 275 MHVEVRDPNDRILLSRVYSLEGMISFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDIQVG 454
MHVEV+DP D+++LS++Y+ EG +FTS+TPGEHVIC+YSNST+WF+G+QLRVHLDIQ G
Sbjct: 63 MHVEVKDPEDKVILSKLYTAEGRFTFTSNTPGEHVICIYSNSTAWFNGAQLRVHLDIQAG 122
Query: 455 EHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQRVLWW 634
+HA DYA +AQK+KL ELQLRIRQLLDQV QITKEQ YQR REERFRQTSESTN RV +W
Sbjct: 123 DHAQDYAQIAQKDKLNELQLRIRQLLDQVDQITKEQNYQRYREERFRQTSESTNSRVFYW 182
Query: 635 SLLQTGVLVIIGYWQMRHLK 694
S+ Q VL I G WQMRHL+
Sbjct: 183 SIAQVVVLAITGAWQMRHLR 202
>AC199170-2|ABO33261.1| 167|Caenorhabditis elegans Hypothetical
protein T08D2.1 protein.
Length = 167
Score = 192 bits (467), Expect = 3e-49
Identities = 85/137 (62%), Positives = 110/137 (80%)
Frame = +2
Query: 95 LLVIALLADCASALYFHIAEGERKCFIEEIPDDTTVIVNYKVELYDPKSGGFMQTTPGIG 274
L+ + LA A +LYFHIAE E+KCFIEEIPD+T V NYKV+LYDP + G+ P IG
Sbjct: 4 LIALLSLATYADSLYFHIAETEKKCFIEEIPDETMVTGNYKVQLYDPNTKGYGDY-PNIG 62
Query: 275 MHVEVRDPNDRILLSRVYSLEGMISFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDIQVG 454
MHVEV+DP D+++LS++Y+ EG +FTS+TPGEHVIC+YSN+T+WF+G+QLRVHLDIQ G
Sbjct: 63 MHVEVKDPEDKVILSKLYTSEGRFTFTSNTPGEHVICIYSNTTAWFNGAQLRVHLDIQAG 122
Query: 455 EHAVDYANVAQKEKLTE 505
+HA DYA V ++ KL E
Sbjct: 123 DHAQDYAQVEEERKLDE 139
>Z74035-1|CAA98480.1| 204|Caenorhabditis elegans Hypothetical
protein F47G9.1 protein.
Length = 204
Score = 92.7 bits (220), Expect = 2e-19
Identities = 63/206 (30%), Positives = 101/206 (49%), Gaps = 2/206 (0%)
Frame = +2
Query: 86 LSSLLVIALLADCASALYFHIAEGERKCFIEEIPDDTTVIVNYKVELYDPKSGGFMQTTP 265
+ SL++ A +L F++ E+KC EEI + V Y+ S G T
Sbjct: 1 MKSLVIFLSAIVLAHSLRFYVPPKEKKCLKEEIHKNVVVTGEYEF------SQGIQYTGS 54
Query: 266 GIGMHVEVRDPNDRILLSR--VYSLEGMISFTSSTPGEHVICMYSNSTSWFSGSQLRVHL 439
+ V D L R L+G +FT+ IC+ ++ + G + V L
Sbjct: 55 -----IHVTDTRGHTLYKRENFADLKGKFAFTADEYDIFEICIENHPPAGHPGEKREVSL 109
Query: 440 DIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQ 619
++ G A +Y ++A+ EKL L++ +R+L D ITK+ A+ RQREE R T+ESTN
Sbjct: 110 ILKHGVEAKNYDDIAKAEKLKPLEVELRRLEDMADSITKDFAFMRQREEEMRNTNESTNS 169
Query: 620 RVLWWSLLQTGVLVIIGYWQMRHLKS 697
RVL+ S+ L+ + WQ+ L++
Sbjct: 170 RVLYLSIFSMLCLLGLAIWQVLFLRN 195
>AF039713-7|AAB96722.1| 203|Caenorhabditis elegans Hypothetical
protein F57B10.5 protein.
Length = 203
Score = 72.9 bits (171), Expect = 2e-13
Identities = 59/210 (28%), Positives = 101/210 (48%), Gaps = 1/210 (0%)
Frame = +2
Query: 71 MELIKLSSLLVIALLADCASALYFHIAEGERKCFIEEIPDDTTVIVNYKVELYDPKSGGF 250
++ + +SS+LV L+ L F + + +CF E++ D + ++V +GG
Sbjct: 2 LKFVIVSSILVALGLS---IELTFELPDNANQCFYEDLKKDVDTVFEFQVV-----TGGH 53
Query: 251 MQTTPGIGMHVEVRDPNDRILLSRVYSLEGMISFTSSTPGEHVICMYSNSTSWFSGSQLR 430
+ + + DPN ++L I+F + G + C +SN S FS
Sbjct: 54 YD------VDLIIEDPNGKVLYKDTKKQYDSINFKAEVEGTYKAC-FSNEFSTFSHKI-- 104
Query: 431 VHLDIQVGEHAVDYANVAQ-KEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSE 607
V++D Q G+ +A V Q +T+L+ + D++ I Q + R RE R+ +E
Sbjct: 105 VYMDWQFGDQNALHAAVTQGAHAMTQLENYAVAIGDKLRTIDDYQTHHRLREATGRKRAE 164
Query: 608 STNQRVLWWSLLQTGVLVIIGYWQMRHLKS 697
N+RV+ WSL Q+ V+V IG Q+ LKS
Sbjct: 165 ELNERVMIWSLGQSAVVVFIGIGQVFLLKS 194
>AF014940-5|AAB63937.1| 203|Caenorhabditis elegans
Suppressor/enhancer of lin-12 protein9 protein.
Length = 203
Score = 59.7 bits (138), Expect = 2e-09
Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 5/203 (2%)
Frame = +2
Query: 101 VIALLADCASALYF-HIAEGERKCFIEEIPDDTTVIVNYKVELYDPKSGGFMQTTPGIGM 277
++A+L +A YF H+ E +CF + + T + + ++V GGF+ +
Sbjct: 7 ILAVLFVTPAASYFIHVDANEEQCFFDRLTSGTKMGLMFEVA-----EGGFLD------I 55
Query: 278 HVEVRDPNDRILLSRVYSLEGMISFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDI---- 445
V++ P+++ + G +F + G + C + N S + + ++I
Sbjct: 56 DVKITGPDNKEIYKGERESSGKFTFAAHMDGVYTYC-FGNKMSTMTPKAVMFTVEITEPH 114
Query: 446 QVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQRV 625
Q A + A KL E+ +R+L + + EQ Y RE R +E+TN RV
Sbjct: 115 QQAPGAAANQDAADNAKLEEM---VRELSSALMSVKHEQEYMEVRERVHRNINENTNSRV 171
Query: 626 LWWSLLQTGVLVIIGYWQMRHLK 694
+ W+ + VLV + Q+ +LK
Sbjct: 172 VMWAAFEAFVLVGMTVGQIFYLK 194
>Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 33.1 bits (72), Expect = 0.20
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +2
Query: 428 RVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQ 598
++ DI E A+D+AN A ++ Q IR+ LDQ+ ++ + +++R E FR+
Sbjct: 1633 KLEADINELEIALDHANKANEDA----QKNIRRYLDQIRELQQTVDEEQKRREEFRE 1685
>Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 33.1 bits (72), Expect = 0.20
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +2
Query: 428 RVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQ 598
++ DI E A+D+AN A ++ Q IR+ LDQ+ ++ + +++R E FR+
Sbjct: 1633 KLEADINELEIALDHANKANEDA----QKNIRRYLDQIRELQQTVDEEQKRREEFRE 1685
>X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy chain 2
protein.
Length = 1947
Score = 33.1 bits (72), Expect = 0.20
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +2
Query: 428 RVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQ 598
++ DI E A+D+AN A ++ Q IR+ LDQ+ ++ + +++R E FR+
Sbjct: 1633 KLEADINELEIALDHANKANEDA----QKNIRRYLDQIRELQQTVDEEQKRREEFRE 1685
>M37235-1|AAA28122.1| 273|Caenorhabditis elegans myosin II protein.
Length = 273
Score = 33.1 bits (72), Expect = 0.20
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +2
Query: 428 RVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQ 598
++ DI E A+D+AN A ++ Q IR+ LDQ+ ++ + +++R E FR+
Sbjct: 133 KLEADINELEIALDHANKANEDA----QKNIRRYLDQIRELQQTVDEEQKRREEFRE 185
>Z75540-4|CAA99849.1| 169|Caenorhabditis elegans Hypothetical
protein F37D6.3 protein.
Length = 169
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = +1
Query: 88 IFTISDSIACRLC----FSFVLPHSRRRTKMFYRRNT*RYHSYSK 210
++T S+ C LC S LPH+ + F RR+ Y+S+SK
Sbjct: 22 LWTDGSSVQCGLCRQNNASVTLPHAPGAIRHFKRRHRKTYNSFSK 66
>AL132904-19|CAD91707.1| 371|Caenorhabditis elegans Hypothetical
protein Y111B2A.26 protein.
Length = 371
Score = 28.7 bits (61), Expect = 4.2
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Frame = +2
Query: 422 QLRVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITK-----EQAYQRQREE 586
+LR HL I V E + A V +++ TEL+ R+R+L + HQ+ + Q YQ Q
Sbjct: 42 RLREHLMI-VEETSTREA-VEAEQRETELRARVRELETKGHQVEEGASESTQQYQVQIAS 99
Query: 587 RFRQTSESTNQRVLWWSLLQTGV 655
Q N+ W +T V
Sbjct: 100 LTSQVESLQNKTTEWKKKFETEV 122
>Z34802-3|CAA84333.1| 354|Caenorhabditis elegans Hypothetical
protein M88.3 protein.
Length = 354
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = -3
Query: 336 SNE*TRDNSILSFGSRTSTCMPMPGVVCMNPP 241
SNE +NS+LS S S+ +P+PG++ + PP
Sbjct: 6 SNE--TNNSLLSSASSFSSFLPVPGILELIPP 35
>U41542-2|AAR30212.1| 623|Caenorhabditis elegans Suppressor of
presenilin defectprotein 3, isoform b protein.
Length = 623
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 229 RSEIWRIHANNTGHRHAR*SPRSE**NTVVSSLFVGRNDL 348
R+ +WR N GH H + P+ E N SS F + +L
Sbjct: 193 RTRLWRYMEENFGHEHLK-QPKLESDNPSTSSSFESQTNL 231
>U41542-1|AAR30211.1| 684|Caenorhabditis elegans Suppressor of
presenilin defectprotein 3, isoform a protein.
Length = 684
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 229 RSEIWRIHANNTGHRHAR*SPRSE**NTVVSSLFVGRNDL 348
R+ +WR N GH H + P+ E N SS F + +L
Sbjct: 193 RTRLWRYMEENFGHEHLK-QPKLESDNPSTSSSFESQTNL 231
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,348,271
Number of Sequences: 27780
Number of extensions: 341634
Number of successful extensions: 1103
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -