Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4b16
         (655 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    29   0.033
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       26   0.24 
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    24   1.3  
DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory pro...    24   1.3  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    24   1.3  
DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    23   1.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.9  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 29.1 bits (62), Expect = 0.033
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +1

Query: 199 KYKPLAVPTKCTSCLEKTVKHAY-HVLCSKCASEKEVCAKCCQ 324
           ++ P  +PT   SC   T    Y  + C +  +EK+ C  C +
Sbjct: 761 RFHPFLIPTGFDSCTVCTCDAKYLEIKCKRIYNEKQCCKNCAR 803


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +1

Query: 55  RPQKHXNRAAFKNDLHDTSHKTKFINSL-EIRGVCXRCKNILEWKIKYKKYKPLAVPT 225
           R ++H   ++F N+LH  S K KF  S  +  G          W+I+ K Y P  +PT
Sbjct: 91  RHERHFE-SSFGNNLH--SEKAKFNESKWQDSGESPGFTTERNWEIREKPYTPPRLPT 145


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 187 IKYKKYKPLAVPTKCTSCLEKTVKHAY 267
           +  K+  P A+ T C  C EK    AY
Sbjct: 58  VDLKRVLPEALQTNCAKCTEKQRTAAY 84


>DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory
           protein 4 protein.
          Length = 133

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 187 IKYKKYKPLAVPTKCTSCLEK 249
           ++ KK  P A+ T C+ C EK
Sbjct: 63  LELKKNMPDAIETDCSKCSEK 83


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
 Frame = -3

Query: 236 LVHLVGTASGLYFLYL----IFHSRMFLHRXQTPRISKEFINLVLWLV--SCKSFLKAAR 75
           L H+VGT SG++   L    I + ++  ++ +  R   E I + + +V  SC++F  AAR
Sbjct: 253 LWHIVGTFSGIFLCDLIRREIANVQVLAYKIEAKRRDNE-IKMFVKIVDASCRNF-TAAR 310

Query: 74  F 72
           F
Sbjct: 311 F 311


>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
           protein 5 protein.
          Length = 144

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 19/60 (31%), Positives = 26/60 (43%)
 Frame = +1

Query: 97  LHDTSHKTKFINSLEIRGVCXRCKNILEWKIKYKKYKPLAVPTKCTSCLEKTVKHAYHVL 276
           LH       +IN L  +G C       E + + KK  P A+ T C+ C E   K A  +L
Sbjct: 47  LHSKRLLLNYINCLLEKGPCSP-----EGR-ELKKILPDALVTNCSKCSEVQKKQAGKIL 100


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 488 NISSIVLIDAGVFFCVPSS 432
           NI++I   D G++ CV SS
Sbjct: 477 NITAIHTNDGGLYRCVASS 495


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.316    0.129    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,591
Number of Sequences: 336
Number of extensions: 2541
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)