Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4b16
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 29 0.77
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 28 1.0
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 28 1.0
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 27 2.4
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom... 27 2.4
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||... 27 2.4
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 27 2.4
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 26 5.5
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 26 5.5
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 25 9.5
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 9.5
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 28.7 bits (61), Expect = 0.77
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1
Query: 283 KCASEKEVCAKCCQNINIEKQEDKKTDI 366
+C E VC CQN ++ E K D+
Sbjct: 157 ECTDEDNVCGPSCQNQRFQRHEFAKVDV 184
>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 563
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 196 KKYKPLAVPTKCTSCLEKTVKHAYHVLCSKCASEKEVC 309
KK++ + P C C + VK CS+C EVC
Sbjct: 9 KKFRKRS-PKSCLICRRRKVKCDRQQPCSRCKERNEVC 45
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 28.3 bits (60), Expect = 1.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 106 TSHKTKFINSLEIRGVCXRCKNILEWK 186
+S T+ L I G+C +CK +L W+
Sbjct: 212 SSFLTEECQVLPIEGMCTKCKRVLRWR 238
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 27.1 bits (57), Expect = 2.4
Identities = 22/75 (29%), Positives = 35/75 (46%)
Frame = +1
Query: 91 NDLHDTSHKTKFINSLEIRGVCXRCKNILEWKIKYKKYKPLAVPTKCTSCLEKTVKHAYH 270
N L + SH F N+ +I GV + NILE + + +S LE+ VK +
Sbjct: 1185 NKLINPSHSVIFFNTDDILGVESKTNNILE-----NHTEAFLIEQAVSSFLERGVKQSSI 1239
Query: 271 VLCSKCASEKEVCAK 315
+ S S+ E+ +K
Sbjct: 1240 GIISIYKSQVELLSK 1254
>SPBC18H10.09 |||zinc finger protein, zf-CHY
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Frame = +1
Query: 250 TVKHAYHVLCSKCASE----KEVCAKCCQNINIEKQ 345
T +HA ++C CA E K+ C N+ ++KQ
Sbjct: 361 TFEHANRIICGYCAMESFYKKDATCPHCGNMTVKKQ 396
>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 130 NSLEIRGVCXRCKNILEWKIKYKKYKPLAVPTKCTSCLEK 249
N+ E VC C I++ ++ KK L+ PT+C+SC ++
Sbjct: 572 NNNESFAVCLACA-IIQRSLERKK---LSTPTQCSSCFQE 607
>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 673
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 130 NSLEIRGVCXRCKNILEWKIKYKKYKPLAVPTKCTSCLEK 249
N+ E VC C I++ ++ KK L+ PT+C+SC ++
Sbjct: 572 NNNESFAVCLACA-IIQRSLERKK---LSTPTQCSSCFQE 607
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +1
Query: 178 EWKIKYKKYKPLAVPTKCTSC-LEKTVKH 261
+W K + KP+A P + TSC + T++H
Sbjct: 483 KWNRKVQYIKPVAPPYRQTSCYITDTIQH 511
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Frame = +1
Query: 268 HVL-CSKCASEKEVCAKCCQNINIEKQEDKKTDILGKLSGLSER 396
HVL S S + VC CC N + D+ SG+ +
Sbjct: 437 HVLPTSDGTSVRSVCVSCCGNFGLIGSSKGVVDVYNMQSGIKRK 480
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 25.0 bits (52), Expect = 9.5
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +1
Query: 229 CTSCLEKTVKHAYHVLCSKCA 291
C C +K AYH+ C++ A
Sbjct: 317 CVQCSDKNCYAAYHITCARRA 337
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/46 (26%), Positives = 20/46 (43%)
Frame = +1
Query: 166 KNILEWKIKYKKYKPLAVPTKCTSCLEKTVKHAYHVLCSKCASEKE 303
+++ W I +K Y T S ++ A VL + S+KE
Sbjct: 2720 RDLTRWLISFKNYAESYAETNNLSLIKVWYHEACRVLLDRLVSQKE 2765
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.129 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,148,409
Number of Sequences: 5004
Number of extensions: 39636
Number of successful extensions: 148
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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