Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4b16
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0801 - 32085110-32085274,32086318-32086365,32086441-320864...   108   3e-24
07_01_1157 + 10954619-10954835,10956078-10957114                       30   1.9  
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57...    30   1.9  
08_01_0604 - 5312558-5312622,5312826-5312917,5314128-5314245,531...    29   3.2  
05_03_0622 - 16293341-16293350,16293783-16294063,16294343-162944...    28   5.6  
06_01_0618 - 4492057-4492590,4492780-4493192,4493714-4494026,449...    27   9.9  

>01_06_0801 -
           32085110-32085274,32086318-32086365,32086441-32086483,
           32086588-32086651,32086740-32086792,32086899-32086937,
           32087031-32087113,32087200-32087280
          Length = 191

 Score =  108 bits (260), Expect = 3e-24
 Identities = 54/143 (37%), Positives = 85/143 (59%), Gaps = 10/143 (6%)
 Frame = +1

Query: 43  TNRTRPQKHXNRAAFKNDLHDTSHKT----KFINSLEIRGVCXRCKNILEWKIKYKKYKP 210
           + R  P KH NR A+K +L    ++T    +F    EI GVC RCK+ ++WK +Y KYKP
Sbjct: 2   SKRQGPPKHQNRYAWKPNLGQKINETEPGGRFRPLSEITGVCQRCKDQIDWKRRYGKYKP 61

Query: 211 LAVPTKCTSCLEKTVKHAYHVLCSKCASEKEVCAKCCQNI------NIEKQEDKKTDILG 372
           +  P KC  C ++ V+ AYH +C+ C+ +  +CAKCC  +      ++ +QE ++ ++  
Sbjct: 62  IVEPAKCQKCGKRNVRQAYHNVCTACSKDLGICAKCCTCVKALVGRDLSEQESERKELEE 121

Query: 373 KLSGLSERKRRTVLRYLKNQEDG 441
            + G  ER+RRT+LR L N+  G
Sbjct: 122 AIRGARERERRTLLR-LMNKGGG 143


>07_01_1157 + 10954619-10954835,10956078-10957114
          Length = 417

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = -3

Query: 242 KQLVHLVGTASGLYFLYLIFHSR----MFLHRXQTPRISKEFINLVLWLVSCKSFLKAAR 75
           +++VH+    S LYF Y + + R    ++L R    R   + IN+ L  +SC SFL  + 
Sbjct: 40  RKIVHMPHLCSELYFAYGLRYGRNFGTIYLRRLGLSRFIAK-INISLCCLSCHSFLYISP 98

Query: 74  F 72
           F
Sbjct: 99  F 99


>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
            579266-579370,579975-580028,580244-580344,580454-581423,
            582030-582203,582341-582643,582719-582856,582993-583247,
            584230-584370,585008-585289,585395-585540,585627-585690,
            585723-585799,586285-586301,587728-587867,587972-588029,
            588121-588218,588727-588776,589260-589743
          Length = 2630

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
 Frame = +1

Query: 100  HDTSHKTKFI-NSLEIRGVCXRCKNILEWKIKYKKYKPLAVPTKCTSCLEKTVKHAYHVL 276
            H    + K+I ++L I  +C R  +I  +K+ +K+   LA       C E+  +  Y  L
Sbjct: 1202 HVVVQEPKYIFHALNI-ALCWRVASIHNFKVDHKESLALAEKRLKYECNEELARLVYDSL 1260

Query: 277  CSKCASEKEVCAKCCQNINIEKQEDKKTD 363
              K   +       CQ+ ++EK +  + +
Sbjct: 1261 KRKFPKKAGATGSNCQSTSVEKTKPSQQE 1289


>08_01_0604 -
           5312558-5312622,5312826-5312917,5314128-5314245,
           5314423-5314438
          Length = 96

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 223 TKCTSCLEKTVKHAYHVLCSKCASEKEVCAKCCQNI 330
           TKC  C ++  + A +  C  CA  K VCA C + +
Sbjct: 52  TKCVICKQQVHQDAKY--CHTCAYSKGVCAMCGKQV 85


>05_03_0622 - 16293341-16293350,16293783-16294063,16294343-16294474,
            16294561-16294741,16295054-16295096,16295183-16295249,
            16296708-16296834,16296985-16297620,16298253-16298761,
            16298842-16299157,16299615-16300053,16300128-16300353,
            16300441-16300625,16300839-16300950,16301459-16301495,
            16301977-16302011,16302497-16302810,16303463-16303475
          Length = 1220

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/22 (50%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
 Frame = -1

Query: 295  QKHI-WSTKRDMRVLQSSLNNS 233
            +KH+ WST+ D+R++ + LNNS
Sbjct: 1067 EKHLGWSTEEDLRLVSAWLNNS 1088


>06_01_0618 -
           4492057-4492590,4492780-4493192,4493714-4494026,
           4495257-4495828,4498324-4498600
          Length = 702

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 196 KKYKPLAVPTKCTSCLEKTVKHAYHVLCSKCASEKEV 306
           + +  L + + C S L   +  A  V+C+KCA E  V
Sbjct: 585 QSFSGLFIISGCISALMLLISVANRVICAKCAKEARV 621


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.129    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,476,628
Number of Sequences: 37544
Number of extensions: 211962
Number of successful extensions: 533
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)