Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4b16
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49207-8|CAJ85773.1|  455|Caenorhabditis elegans Hypothetical pr...    31   0.94 
Z49207-7|CAA89072.1|  512|Caenorhabditis elegans Hypothetical pr...    31   0.94 
U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical p...    30   1.6  
Z93383-14|CAB07631.2|  279|Caenorhabditis elegans Hypothetical p...    29   2.9  
Z81595-4|CAB04751.1|   91|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z80215-15|CAJ30222.1|   99|Caenorhabditis elegans Hypothetical p...    29   2.9  
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ...    29   2.9  
U41026-6|AAA82353.1| 1081|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z93383-10|CAB07632.1|  286|Caenorhabditis elegans Hypothetical p...    28   5.0  
Z75711-6|CAB00037.3|  387|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U88169-3|AAK68396.1|  345|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U88169-2|AAB42234.1|  342|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U41277-1|AAA82472.1|  238|Caenorhabditis elegans Hypothetical pr...    28   5.0  

>Z49207-8|CAJ85773.1|  455|Caenorhabditis elegans Hypothetical
           protein R07E3.5b protein.
          Length = 455

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 346 EDKKTDILGKLSGLSERKRRTVLRYLKNQED 438
           E+K +DIL  + G+SE +R  +L+ +  Q+D
Sbjct: 396 EEKSSDILNIMQGISEEERDELLKQIDEQDD 426


>Z49207-7|CAA89072.1|  512|Caenorhabditis elegans Hypothetical
           protein R07E3.5a protein.
          Length = 512

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 346 EDKKTDILGKLSGLSERKRRTVLRYLKNQED 438
           E+K +DIL  + G+SE +R  +L+ +  Q+D
Sbjct: 453 EEKSSDILNIMQGISEEERDELLKQIDEQDD 483


>U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical
           protein C33F10.2 protein.
          Length = 826

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 25/82 (30%), Positives = 35/82 (42%)
 Frame = +1

Query: 205 KPLAVPTKCTSCLEKTVKHAYHVLCSKCASEKEVCAKCCQNINIEKQEDKKTDILGKLSG 384
           K L    KC   LE  ++    + CSK  S  EV A+   NIN  K  + K +   K   
Sbjct: 236 KRLPYHKKC-EWLEAIIRKCLQMCCSKRCSITEVAAEIEININGVKNNNNKYEYKVK--- 291

Query: 385 LSERKRRTVLRYLKNQEDGTQK 450
             E  R  V + + +  DG +K
Sbjct: 292 TVEEMRAAVRKEVADNNDGFEK 313


>Z93383-14|CAB07631.2|  279|Caenorhabditis elegans Hypothetical
           protein F54B8.12 protein.
          Length = 279

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/70 (27%), Positives = 31/70 (44%)
 Frame = -3

Query: 218 TASGLYFLYLIFHSRMFLHRXQTPRISKEFINLVLWLVSCKSFLKAARFXCFCGLVLLVF 39
           T +  Y  Y  FH ++     +T  +   FI L +W  S     K  +      L+LL+F
Sbjct: 163 TFNECYQKYWEFHEQVVFSLIETLSLLL-FIRLYIWKRSSHLLHKVTQIALLDSLMLLLF 221

Query: 38  PLDKLXVYSF 9
            +  L +YS+
Sbjct: 222 NISPLLLYSY 231


>Z81595-4|CAB04751.1|   91|Caenorhabditis elegans Hypothetical
           protein T22H2.4 protein.
          Length = 91

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/65 (29%), Positives = 28/65 (43%)
 Frame = +1

Query: 274 LCSKCASEKEVCAKCCQNINIEKQEDKKTDILGKLSGLSERKRRTVLRYLKNQEDGTQKK 453
           +C KCA   ++CAK C+     K   KK    GK+     +K    L+  K  +    K 
Sbjct: 8   MCKKCAKMCKICAKVCK--KCAKNVQKKCKKCGKMCKKCAKK---CLKKSKFSDPRNPKM 62

Query: 454 TPASI 468
            P S+
Sbjct: 63  LPTSL 67


>Z80215-15|CAJ30222.1|   99|Caenorhabditis elegans Hypothetical
           protein C36B1.14 protein.
          Length = 99

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +1

Query: 205 KPLAVPTKCTSCLEKTVKHAYHVLCSKCASEKEVCAKCCQNINIEK 342
           K   V  KC  C     +   H  CS CA +K +CA C + I   K
Sbjct: 48  KATIVGAKCKLCKMLIHQPGSHY-CSTCAYQKGICAMCGKKIQNTK 92


>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
            potassium channelsprotein 2 protein.
          Length = 1564

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
 Frame = +1

Query: 85   FKN-DLHDTSHKTKFINSLEIRGVCXRCKNILEWKIKY--KKYKPLA--VPTKCTSCLEK 249
            FKN  LH T+      N+  +  +C +C   ++   K   K  +  A  V   C  C + 
Sbjct: 1238 FKNYHLHKTARMLACANN--VPKMCKKCAENVQKMCKKCAKNVQKCAKNVQKMCKKCAKN 1295

Query: 250  TVKHAYHV--LCSKCASE-KEVCAKCCQNI 330
              K       +C KCA   +++C KC +N+
Sbjct: 1296 VQKMCKKCAKMCKKCAKNVQKMCKKCAKNV 1325


>U41026-6|AAA82353.1| 1081|Caenorhabditis elegans Hypothetical
           protein C28G1.4 protein.
          Length = 1081

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/81 (20%), Positives = 35/81 (43%)
 Frame = +1

Query: 91  NDLHDTSHKTKFINSLEIRGVCXRCKNILEWKIKYKKYKPLAVPTKCTSCLEKTVKHAYH 270
           N   D  +  KF +++++  +  + + +L      + Y+ L    K + C +    H Y+
Sbjct: 766 NSSQDNENTEKFASNIDV--LYFQMRKVLGRGFPERNYRCLECSFKTSDC-DAMQLHTYY 822

Query: 271 VLCSKCASEKEVCAKCCQNIN 333
              SK       C++C  N+N
Sbjct: 823 HKSSKLEDRNFQCSECTFNVN 843


>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
           protein Y11D7A.14 protein.
          Length = 1464

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +1

Query: 280 SKCASEKEVCAKCCQNINIEKQEDK--KTDILGKLSGLSE 393
           SK ASEKE C   CQ+  + K+     KT +  K+  +SE
Sbjct: 714 SKGASEKEKCTLICQDAQVRKERYAVGKTKLFCKVGVISE 753


>Z93383-10|CAB07632.1|  286|Caenorhabditis elegans Hypothetical
           protein F54B8.11 protein.
          Length = 286

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 131 FINLVLWLVSCKSFLKAARFXCFCGLVLLVFPLDKLXVYSF 9
           FI L +W  S + F K  +      L+LL+F +  +  YS+
Sbjct: 191 FIRLFIWKNSKQRFCKVTQIALLDSLILLLFNIIPIFFYSY 231


>Z75711-6|CAB00037.3|  387|Caenorhabditis elegans Hypothetical
           protein K02B12.8 protein.
          Length = 387

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/29 (31%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 253 VKHAYHVLCSKCA-SEKEVCAKCCQNINI 336
           +   +H+ C+KCA ++  VC  C +N+ +
Sbjct: 20  ISSCFHIFCTKCAKADLAVCLICKKNVRL 48


>U88169-3|AAK68396.1|  345|Caenorhabditis elegans Hypothetical
           protein T03F1.6b protein.
          Length = 345

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
 Frame = +1

Query: 82  AFKNDLHDTSHKTKFIN------SLEIRGVCXRCKNILEWKIKYKKYKPLAVPTKCTSCL 243
           A + ++HD  +   FIN      +L + G C   ++++++    +K +    P K TS L
Sbjct: 56  ALRVEVHDNDYSVYFINKDSRVTNLNLTG-CD-WEDVIKYGTCIEKLELNICPGKSTSQL 113

Query: 244 EKTVKHAYHVLCSKCASEKEVCAKCCQNI-NIEKQ 345
            +T+K A   L S   +      KC Q + N+EK+
Sbjct: 114 FQTIKRASFTLRSLKINVLAGADKCVQKMKNLEKR 148


>U88169-2|AAB42234.1|  342|Caenorhabditis elegans Hypothetical
           protein T03F1.6a protein.
          Length = 342

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
 Frame = +1

Query: 82  AFKNDLHDTSHKTKFIN------SLEIRGVCXRCKNILEWKIKYKKYKPLAVPTKCTSCL 243
           A + ++HD  +   FIN      +L + G C   ++++++    +K +    P K TS L
Sbjct: 56  ALRVEVHDNDYSVYFINKDSRVTNLNLTG-CD-WEDVIKYGTCIEKLELNICPGKSTSQL 113

Query: 244 EKTVKHAYHVLCSKCASEKEVCAKCCQNI-NIEKQ 345
            +T+K A   L S   +      KC Q + N+EK+
Sbjct: 114 FQTIKRASFTLRSLKINVLAGADKCVQKMKNLEKR 148


>U41277-1|AAA82472.1|  238|Caenorhabditis elegans Hypothetical
           protein C06E4.5 protein.
          Length = 238

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = -3

Query: 167 LHRXQTPRISKEFINLVLWLVSCKSFLKAARFXCFCGLVLLVFPLDKLXVYS 12
           LH  Q+ RI K+   ++ WL    S  K A     CG VL+    D L  YS
Sbjct: 55  LHAHQSIRIMKQ---VIFWLFVANSKFKFAHQDLHCGNVLIGKTKDVLLQYS 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.316    0.129    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,955,477
Number of Sequences: 27780
Number of extensions: 229398
Number of successful extensions: 826
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)