Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4b14
(665 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar... 175 6e-45
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc... 54 2e-08
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 44 1e-05
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 26 4.2
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 26 5.6
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 26 5.6
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 25 7.4
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 25 9.8
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1... 25 9.8
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|... 25 9.8
>SPAC4A8.13c |pts1||20S proteasome component beta
5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 175 bits (425), Expect = 6e-45
Identities = 84/174 (48%), Positives = 113/174 (64%), Gaps = 1/174 (0%)
Frame = +1
Query: 145 PAETLAHFSTKDET-GKEIKIQFDXGXXTLGFRYKGGVLLAVDSRATGGXFIGSQSMKKI 321
P +L + DET K I+ + G TL FRY+ G+++ VDSRA+ G I SQ++KK+
Sbjct: 36 PQSSLYLRNLTDETKNKHCLIKMNHGTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKV 95
Query: 322 VEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNRERISVAAASKLMANMVYNYKXXX 501
+EIN YLLGTLAGGAADC +W+ VL +CRL++LRN+E ISV+AASK+++N+ Y+YK
Sbjct: 96 IEINPYLLGTLAGGAADCQFWETVLGMECRLHQLRNKELISVSAASKILSNITYSYKGYG 155
Query: 502 XXXXXXXXXIDKRGAQLYYVDSEGTRTPXXXXXXXXXXXYAFGVLDSGYSWDLS 663
K G LYY+DS+GTR +A+GVLDSGY WDLS
Sbjct: 156 LSMGTMLAGTGKGGTALYYIDSDGTRLKGDLFSVGSGSTFAYGVLDSGYRWDLS 209
>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 53.6 bits (123), Expect = 2e-08
Identities = 35/144 (24%), Positives = 58/144 (40%)
Frame = +1
Query: 217 GXXTLGFRYKGGVLLAVDSRATGGXFIGSQSMKKIVEINDYLLGTLAGGAADCVYWDRVL 396
G RYK GV+LA DSR T G +I ++ K+ ++ D + +G AAD +L
Sbjct: 24 GTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLL 83
Query: 397 AKQCRLYELRNRERISVAAASKLMANMVYNYKXXXXXXXXXXXXIDKRGAQLYYVDSEGT 576
+Y ++ SV A+ L + M Y K +K G +Y + G+
Sbjct: 84 KYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNMLSAGLIVAGYDEKTGGDVYSIPLGGS 143
Query: 577 RTPXXXXXXXXXXXYAFGVLDSGY 648
+ +G D+ +
Sbjct: 144 LHKQPLAIGGSGSAFIYGFCDANF 167
>SPAC23D3.07 |pup1||20S proteasome component beta
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 44.4 bits (100), Expect = 1e-05
Identities = 33/148 (22%), Positives = 60/148 (40%)
Frame = +1
Query: 217 GXXTLGFRYKGGVLLAVDSRATGGXFIGSQSMKKIVEINDYLLGTLAGGAADCVYWDRVL 396
G +G K ++L D+RAT G I ++ KK+ I+ + AG AAD + ++
Sbjct: 35 GTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADTEFVTSMI 94
Query: 397 AKQCRLYELRNRERISVAAASKLMANMVYNYKXXXXXXXXXXXXIDKRGAQLYYVDSEGT 576
+ L+ L + V A ++ ++ Y+ D +G L+ + + G+
Sbjct: 95 SSNIELHSLYTNRKPRVVTALTMLKQHLFRYQ-GHIGAYLVLGGYDCKGPHLFTIAAHGS 153
Query: 577 RTPXXXXXXXXXXXYAFGVLDSGYSWDL 660
A VL++ Y DL
Sbjct: 154 SDKLPYVALGSGSLAAISVLETKYQPDL 181
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -1
Query: 182 SSFVLKCAKVSAGFANGGEAS*ALFTKFSLXPVMSLLNDARESTG 48
S+F+ K+ + GG A ALFTK ++ P + + S G
Sbjct: 516 SAFITPENKLMTAYHEGGHALVALFTKNAMRPYKATIMPRGSSLG 560
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 25.8 bits (54), Expect = 5.6
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -3
Query: 444 RNTLPIPKLIETALLCEYSVPVDTVCCTTSESTKQIV 334
+N +PKL+E S P V CTTSES + IV
Sbjct: 496 KNGNDLPKLVEGLKRLSKSDPC--VLCTTSESGEHIV 530
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.8 bits (54), Expect = 5.6
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -3
Query: 444 RNTLPIPKLIETALLCEYSVPVDTVCCTTSESTKQIV 334
+N +PKL+E S P V CTTSES + IV
Sbjct: 496 KNGNDLPKLVEGLKRLSKSDPC--VLCTTSESGEHIV 530
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 596 SQWAQVLCMLLVYLTLDTAGIC 661
SQ +LC LVY T + G+C
Sbjct: 53 SQLENILCFFLVYRTTYSFGVC 74
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 25.0 bits (52), Expect = 9.8
Identities = 14/54 (25%), Positives = 29/54 (53%)
Frame = -2
Query: 463 VYWLLLQKYAPYSEAHRDGIALRVLCPSRHSLLHHQREYQANSR*FLLFSSWIE 302
+ W ++KY+ +EA + G A +V ++S + H ++ S +L S W++
Sbjct: 447 IVWSRIKKYSAIAEAKKKGFARKVK-RIKYSKISHPTYTESVSFLWLDSSLWLD 499
>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
Phf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 25.0 bits (52), Expect = 9.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 447 YRNTLPIPKLIETALLCEYSVP 382
Y ++LP P L + L CE S P
Sbjct: 271 YLSSLPTPHLADLILFCEKSYP 292
>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 532
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 247 GGVLLAVDSRATGGXFIGSQSMKKIVE 327
GG L++ TGG +G Q KK E
Sbjct: 344 GGSLISTSDHETGGLTVGRQVSKKYPE 370
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,382,785
Number of Sequences: 5004
Number of extensions: 42238
Number of successful extensions: 128
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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