Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4b14
(665 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0387 - 2770387-2770514,2770963-2771063,2771152-2771255,277... 80 2e-15
06_01_0285 - 2090427-2090558,2091045-2091119,2091334-2091407,209... 50 1e-06
02_05_0884 - 32483735-32483866,32484417-32484491,32484707-324847... 49 3e-06
09_04_0728 - 19771975-19772093,19772131-19772224,19772322-197725... 29 4.4
04_04_0785 + 28048368-28048372,28049387-28049447,28050083-280501... 28 5.8
02_05_0444 - 29073740-29073844,29074417-29074725,29077910-290779... 28 7.7
02_02_0402 - 9852407-9853519 28 7.7
>06_01_0387 -
2770387-2770514,2770963-2771063,2771152-2771255,
2771345-2771507,2771550-2771596,2772818-2772946
Length = 223
Score = 79.8 bits (188), Expect = 2e-15
Identities = 38/86 (44%), Positives = 51/86 (59%)
Frame = +1
Query: 397 AKQCRLYELRNRERISVAAASKLMANMVYNYKXXXXXXXXXXXXIDKRGAQLYYVDSEGT 576
A QCRL+EL N+ RIS+A ASKL+AN++Y+Y+ D++G LYYVDSEG
Sbjct: 66 AFQCRLHELANKRRISIAGASKLLANILYSYRGMGLSIGTMIAGWDEKGPGLYYVDSEGA 125
Query: 577 RTPXXXXXXXXXXXYAFGVLDSGYSW 654
R YA+G+LD GY +
Sbjct: 126 RLMGSRFSVGSGSLYAYGILDEGYRY 151
>06_01_0285 -
2090427-2090558,2091045-2091119,2091334-2091407,
2091792-2091903,2092036-2092108,2092291-2092346,
2092679-2092755,2093384-2093525
Length = 246
Score = 50.4 bits (115), Expect = 1e-06
Identities = 34/149 (22%), Positives = 61/149 (40%)
Frame = +1
Query: 217 GXXTLGFRYKGGVLLAVDSRATGGXFIGSQSMKKIVEINDYLLGTLAGGAADCVYWDRVL 396
G +G Y GGV+LA DSR + G ++ +++ KI ++ D + +G AAD +
Sbjct: 25 GTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADTQVISEYV 84
Query: 397 AKQCRLYELRNRERISVAAASKLMANMVYNYKXXXXXXXXXXXXIDKRGAQLYYVDSEGT 576
+ ++ + +V A+ L+ + Y K G Q++ V GT
Sbjct: 85 RYFLHQHTIQLGQPATVKVAANLIRLLAYQNKNMLQAGMIVGGWDKYEGGQIFSVPLGGT 144
Query: 577 RTPXXXXXXXXXXXYAFGVLDSGYSWDLS 663
Y +G+LD + +S
Sbjct: 145 ILRQPFAIGGSGSSYLYGLLDHEWKEGMS 173
>02_05_0884 -
32483735-32483866,32484417-32484491,32484707-32484780,
32485180-32485291,32485476-32485548,32485674-32485729,
32486046-32486122,32486799-32486940
Length = 246
Score = 49.2 bits (112), Expect = 3e-06
Identities = 34/149 (22%), Positives = 61/149 (40%)
Frame = +1
Query: 217 GXXTLGFRYKGGVLLAVDSRATGGXFIGSQSMKKIVEINDYLLGTLAGGAADCVYWDRVL 396
G +G Y GGV+LA DSR + G ++ +++ KI ++ D + +G AAD +
Sbjct: 25 GTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYICRSGSAADTQVISDYV 84
Query: 397 AKQCRLYELRNRERISVAAASKLMANMVYNYKXXXXXXXXXXXXIDKRGAQLYYVDSEGT 576
+ ++ + +V A+ L+ + Y K G Q++ V GT
Sbjct: 85 RYFLHQHTIQLGQPATVKVAANLIRLLAYQNKNMLQAGMIVGGWDKYEGGQIFSVPLGGT 144
Query: 577 RTPXXXXXXXXXXXYAFGVLDSGYSWDLS 663
Y +G+LD + +S
Sbjct: 145 ILRQPFAIGGSGSSYLYGLLDHEWKEGMS 173
>09_04_0728 -
19771975-19772093,19772131-19772224,19772322-19772507,
19772596-19772767,19772854-19772983,19773060-19773136,
19774109-19774194,19774508-19774585,19775916-19776045,
19776379-19776423,19776508-19776618,19776801-19777057,
19777153-19777302,19777899-19778008,19778426-19778546
Length = 621
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/52 (26%), Positives = 29/52 (55%)
Frame = +1
Query: 217 GXXTLGFRYKGGVLLAVDSRATGGXFIGSQSMKKIVEINDYLLGTLAGGAAD 372
G + +YK GV++A D+ A+ G + +S+++I + + L +G +D
Sbjct: 369 GSSIIALKYKDGVIMASDTGASYGSTLRYKSVERIKAVGKHSLIGASGEFSD 420
>04_04_0785 +
28048368-28048372,28049387-28049447,28050083-28050151,
28050249-28050303,28050386-28050433,28050534-28050629,
28050895-28051051,28051250-28051340,28051431-28051559,
28051650-28051803,28052147-28052241,28052316-28052498
Length = 380
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -3
Query: 213 VKLNFDFLSSLILCAEVC*GFSRIRKWGRSELSAVYKVFTVAGNVIIE 70
+KL FD ++ A VC GF +W +L+++Y + I+E
Sbjct: 187 IKLWFDKKITIPKVANVCSGFDDPSRWTFFDLTSIYDDYADKSTTIVE 234
>02_05_0444 -
29073740-29073844,29074417-29074725,29077910-29077981,
29078541-29078633,29078825-29078982,29079247-29079415,
29080204-29081241,29081632-29081759,29081926-29081985,
29082033-29083077
Length = 1058
Score = 27.9 bits (59), Expect = 7.7
Identities = 22/85 (25%), Positives = 39/85 (45%)
Frame = +1
Query: 226 TLGFRYKGGVLLAVDSRATGGXFIGSQSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQ 405
+LG K VL+ TG + ++ + + V+ + +L T AA +R+
Sbjct: 481 SLGLNKKRPVLIIQGPPGTGKTVLLTELIVRAVQQGENVLVTAPSNAAVDNMVERLSNTG 540
Query: 406 CRLYELRNRERISVAAASKLMANMV 480
+ + N RIS + ASK +A +V
Sbjct: 541 LNIVRVGNPARISPSVASKSLAEIV 565
>02_02_0402 - 9852407-9853519
Length = 370
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Frame = -2
Query: 442 KYAPYSEAHR--DGIALRVLCPSRHS 371
+YA E HR DG+ LRV+ PSRHS
Sbjct: 323 EYAVSPECHRGEDGV-LRVIAPSRHS 347
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,809,700
Number of Sequences: 37544
Number of extensions: 292522
Number of successful extensions: 699
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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