Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4b14
         (665 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81564-1|CAB04567.1|  284|Caenorhabditis elegans Hypothetical pr...   134   7e-32
AC006672-3|AAK84540.1|  239|Caenorhabditis elegans Proteasome be...    58   6e-09
Z99709-4|CAB16855.1|  277|Caenorhabditis elegans Hypothetical pr...    56   2e-08
Z80215-2|CAB02269.1|  253|Caenorhabditis elegans Hypothetical pr...    35   0.045
Z81079-4|CAB03081.1|  236|Caenorhabditis elegans Hypothetical pr...    32   0.32 

>Z81564-1|CAB04567.1|  284|Caenorhabditis elegans Hypothetical
           protein K05C4.1 protein.
          Length = 284

 Score =  134 bits (323), Expect = 7e-32
 Identities = 71/169 (42%), Positives = 100/169 (59%), Gaps = 7/169 (4%)
 Frame = +1

Query: 163 HFSTKDETGKEIKIQFDXGXXTLGFRY-------KGGVLLAVDSRATGGXFIGSQSMKKI 321
           HF+  +  GK +  QF  G  TL F Y       KGG+++AVDSRA+ G +I S+S+ KI
Sbjct: 50  HFA--ETAGKSM--QFRKGTTTLAFVYEPATPADKGGIIVAVDSRASSGEYISSKSVMKI 105

Query: 322 VEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNRERISVAAASKLMANMVYNYKXXX 501
           ++I D ++ T+AGGAADC +W R++AK C LYELR +  I+V+AASK  AN +Y Y+   
Sbjct: 106 LDIGDRMVATMAGGAADCQFWTRIVAKYCTLYELREKTSITVSAASKYFANTLYGYRGQG 165

Query: 502 XXXXXXXXXIDKRGAQLYYVDSEGTRTPXXXXXXXXXXXYAFGVLDSGY 648
                     DK+G Q++ VDSEG R              A+G+LD+ Y
Sbjct: 166 LSVGSMVAGYDKKGPQIFKVDSEGDRCQLKVCSVGSGSLNAYGILDNHY 214


>AC006672-3|AAK84540.1|  239|Caenorhabditis elegans Proteasome beta
           subunit protein 1 protein.
          Length = 239

 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 34/153 (22%), Positives = 65/153 (42%)
 Frame = +1

Query: 205 QFDXGXXTLGFRYKGGVLLAVDSRATGGXFIGSQSMKKIVEINDYLLGTLAGGAADCVYW 384
           +   G   +   Y GGV++  DSR + G FI S++  KI  I D ++   +G AAD    
Sbjct: 19  EISTGTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSAADTQAI 78

Query: 385 DRVLAKQCRLYELRNRERISVAAASKLMANMVYNYKXXXXXXXXXXXXIDKRGAQLYYVD 564
             +      +Y +   + +++  +S++    +YNY+             ++ G Q+Y + 
Sbjct: 79  ADIAKYHIDVYTMTENKPVTIYRSSQIFRQFLYNYREQLSASVLVAGWDEELGGQVYAIP 138

Query: 565 SEGTRTPXXXXXXXXXXXYAFGVLDSGYSWDLS 663
             G  +            +  G LDS +  +L+
Sbjct: 139 IGGFVSRQRSTASGSGSTFVQGFLDSQWRPNLT 171


>Z99709-4|CAB16855.1|  277|Caenorhabditis elegans Hypothetical
           protein C47B2.4 protein.
          Length = 277

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 38/159 (23%), Positives = 66/159 (41%)
 Frame = +1

Query: 187 GKEIKIQFDXGXXTLGFRYKGGVLLAVDSRATGGXFIGSQSMKKIVEINDYLLGTLAGGA 366
           GK  K+    G   +   +KGG+++  DSRAT G  I  +  +K+ ++ + +    AG A
Sbjct: 37  GKAPKLT-STGTTIVAVAFKGGLVMGADSRATAGNIIADKHCEKVHKLTESIYACGAGTA 95

Query: 367 ADCVYWDRVLAKQCRLYELRNRERISVAAASKLMANMVYNYKXXXXXXXXXXXXIDKRGA 546
           AD     ++L+   RL EL    +  V  A +     ++NY+            +D  G 
Sbjct: 96  ADLDQVTKMLSGNLRLLELNTGRKARVITALRQAKQHLFNYQ-GYIGAYLLIGGVDPTGP 154

Query: 547 QLYYVDSEGTRTPXXXXXXXXXXXYAFGVLDSGYSWDLS 663
            LY   + GT               A  +L+  +  D++
Sbjct: 155 HLYMCSANGTTMAFPFTAQGSGSYAAITILERDFKVDMT 193


>Z80215-2|CAB02269.1|  253|Caenorhabditis elegans Hypothetical
           protein C36B1.4 protein.
          Length = 253

 Score = 35.1 bits (77), Expect = 0.045
 Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
 Frame = +1

Query: 217 GXXTLGFRYKGGVLLAVDSRATGGXFIGSQSMKKIVEINDYLLGTLAGGAADC-VYWDRV 393
           G   +G R K  +++ V+ ++        ++++KI  I+D+++   AG +AD  V  DR 
Sbjct: 30  GSTAVGVRGKDCIVIGVEKKSIPA-LQDDRTIRKIHMIDDHVMLAFAGLSADARVLVDRA 88

Query: 394 LAKQCRLYELRNRERISVAAASKLMAN 474
              +C+ Y+L   + ++VA  S+ +AN
Sbjct: 89  RI-ECQSYKLTLEDPVTVAYISRYIAN 114


>Z81079-4|CAB03081.1|  236|Caenorhabditis elegans Hypothetical
           protein F39H11.5 protein.
          Length = 236

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 20/89 (22%), Positives = 42/89 (47%)
 Frame = +1

Query: 217 GXXTLGFRYKGGVLLAVDSRATGGXFIGSQSMKKIVEINDYLLGTLAGGAADCVYWDRVL 396
           G   +  +YK GV++  D   + G     +++ +  ++ND +L    G  AD  +   V+
Sbjct: 17  GTSVIALQYKTGVVVLTDRVVSYGKMARYKNVSRQYKVNDNVLIAFGGDHADFHWLQNVI 76

Query: 397 AKQCRLYELRNRERISVAAASKLMANMVY 483
            +Q  L++ R  + I   A    + +++Y
Sbjct: 77  ERQVLLWK-RFDQDIGPKALHGYLTSLLY 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,306,560
Number of Sequences: 27780
Number of extensions: 247566
Number of successful extensions: 627
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)