Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4b13
         (724 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79599-1|CAB01871.4|  493|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z79597-3|CAB01862.4|  493|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U28738-11|AAK68399.3|  166|Caenorhabditis elegans Sr protein (sp...    28   7.8  
U28738-10|AAK72066.3|  208|Caenorhabditis elegans Sr protein (sp...    28   7.8  
U28738-9|AAA68314.3|  208|Caenorhabditis elegans Sr protein (spl...    28   7.8  
AC006642-9|AAX88828.1|  339|Caenorhabditis elegans Laterally sym...    28   7.8  
AC006642-8|AAF39827.2|  365|Caenorhabditis elegans Laterally sym...    28   7.8  

>Z79599-1|CAB01871.4|  493|Caenorhabditis elegans Hypothetical
           protein C33A11.4 protein.
          Length = 493

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
 Frame = +2

Query: 263 DPRSWCRADVGAW---VSRRGGLP------ERFPM-NGKALCLMSRDMFASRVPNKGFEL 412
           DP  W   DV AW   V++R  +P       +F M +G+ +  MS   F  R P  G  +
Sbjct: 135 DPNEWLVDDVVAWMLDVAKRHNIPFEEMNMHKFAMLSGQEMLTMSERCFIERDPVFGNLI 194

Query: 413 HQDFRRRL 436
             +FR+ L
Sbjct: 195 FNEFRKTL 202


>Z79597-3|CAB01862.4|  493|Caenorhabditis elegans Hypothetical
           protein C33A11.4 protein.
          Length = 493

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
 Frame = +2

Query: 263 DPRSWCRADVGAW---VSRRGGLP------ERFPM-NGKALCLMSRDMFASRVPNKGFEL 412
           DP  W   DV AW   V++R  +P       +F M +G+ +  MS   F  R P  G  +
Sbjct: 135 DPNEWLVDDVVAWMLDVAKRHNIPFEEMNMHKFAMLSGQEMLTMSERCFIERDPVFGNLI 194

Query: 413 HQDFRRRL 436
             +FR+ L
Sbjct: 195 FNEFRKTL 202


>U28738-11|AAK68399.3|  166|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform b protein.
          Length = 166

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -2

Query: 333 KRSGRPPRRDTHAPTS--ARHQDRGSNGRSSSCNTLKSRAP 217
           +R  R PRR +  P    +R +DR  + RS S ++ +SR+P
Sbjct: 88  RRRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRSP 128


>U28738-10|AAK72066.3|  208|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform d protein.
          Length = 208

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -2

Query: 333 KRSGRPPRRDTHAPTS--ARHQDRGSNGRSSSCNTLKSRAP 217
           +R  R PRR +  P    +R +DR  + RS S ++ +SR+P
Sbjct: 88  RRRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRSP 128


>U28738-9|AAA68314.3|  208|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform a protein.
          Length = 208

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -2

Query: 333 KRSGRPPRRDTHAPTS--ARHQDRGSNGRSSSCNTLKSRAP 217
           +R  R PRR +  P    +R +DR  + RS S ++ +SR+P
Sbjct: 88  RRRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRSP 128


>AC006642-9|AAX88828.1|  339|Caenorhabditis elegans Laterally
           symmetric (defectivein lateral asymmetry) protein 2,
           isoform b protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 354 CV*CPGTCSLRGFQTKDLNCIRTSEGDWPKLWRYRTSSRRCP 479
           C  C  TC L+G   K L    T++ +    WR   S+RR P
Sbjct: 110 CPYCGKTCRLKGNLKKHLRTHVTTKEELEAAWRPFASNRRPP 151


>AC006642-8|AAF39827.2|  365|Caenorhabditis elegans Laterally
           symmetric (defectivein lateral asymmetry) protein 2,
           isoform a protein.
          Length = 365

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 354 CV*CPGTCSLRGFQTKDLNCIRTSEGDWPKLWRYRTSSRRCP 479
           C  C  TC L+G   K L    T++ +    WR   S+RR P
Sbjct: 136 CPYCGKTCRLKGNLKKHLRTHVTTKEELEAAWRPFASNRRPP 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,910,062
Number of Sequences: 27780
Number of extensions: 367808
Number of successful extensions: 954
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)