Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4b13
         (724 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.2  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          23   3.9  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   6.7  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   6.7  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -1

Query: 397 VWNPRSEHVPGHQTQGLPVHREALRETAA 311
           V N    H+PGH   G P +  A   T +
Sbjct: 206 VQNGYGRHLPGHAQMGRPSYTTATMATTS 234


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 424 PKETGQSSGATGLHREDV 477
           P+E+ Q++   G+HR+ V
Sbjct: 50  PRESAQTTSKAGIHRKKV 67


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 424 PKETGQSSGATGLHREDV 477
           P+E  Q++   G+HR+ V
Sbjct: 49  PREPAQTTSKAGIHRKKV 66


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 424 PKETGQSSGATGLHREDV 477
           P+E  Q++   G+HR+ V
Sbjct: 171 PREPAQTTSKAGIHRKKV 188


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,522
Number of Sequences: 438
Number of extensions: 4493
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)