Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4b10
         (777 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033514-19|CAA22104.1|  696|Caenorhabditis elegans Hypothetical...    29   4.9  
AC006610-3|AAK85449.1|  264|Caenorhabditis elegans Hypothetical ...    29   4.9  
Z82051-4|CAB04818.2|  339|Caenorhabditis elegans Hypothetical pr...    28   8.6  
U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical pr...    28   8.6  

>AL033514-19|CAA22104.1|  696|Caenorhabditis elegans Hypothetical
           protein Y75B8A.19 protein.
          Length = 696

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +3

Query: 438 VINMFLNDEIENDKIYKL 491
           V+ +FLNDE+ NDK+Y L
Sbjct: 206 VVEIFLNDELLNDKLYIL 223


>AC006610-3|AAK85449.1|  264|Caenorhabditis elegans Hypothetical
           protein C30F12.3 protein.
          Length = 264

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 450 FLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVT 578
           F  D+  N+KIYK V TV     L+R ++     AL +  S T
Sbjct: 207 FFRDKRNNEKIYKEVVTVKKIQLLTRMRISLSAEALGSESSHT 249


>Z82051-4|CAB04818.2|  339|Caenorhabditis elegans Hypothetical
           protein T23D5.7 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 756 KLIKD*NCILHKFIFIFIYLTINTPAIGMLRPVL 655
           K++ D    LHK IF  + L I TP I +  P++
Sbjct: 236 KMVSDQERKLHKQIFKTLMLQITTPTIVLFSPII 269


>U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical
           protein T26A5.5a protein.
          Length = 1076

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 150 KNTESNVEDIPSHKAKSVRKKLEIEQALDAIL 245
           +N++S  + I   K K  R+++E+E  LDA L
Sbjct: 681 RNSKSKKDKISKEKKKKERERIELESQLDAEL 712


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,560,946
Number of Sequences: 27780
Number of extensions: 295016
Number of successful extensions: 797
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)