Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4b06
         (734 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5LJP6 Cluster: CG17698-PB, isoform B; n=2; Drosophila ...    33   5.5  
UniRef50_A7SVJ0 Cluster: Predicted protein; n=1; Nematostella ve...    33   7.3  

>UniRef50_Q5LJP6 Cluster: CG17698-PB, isoform B; n=2; Drosophila
           melanogaster|Rep: CG17698-PB, isoform B - Drosophila
           melanogaster (Fruit fly)
          Length = 676

 Score = 33.5 bits (73), Expect = 5.5
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = -2

Query: 214 EKTFSDK*LKTSCSIKLLRINVSRCFCNAIRFSSNIVYLEIGTEI 80
           E TF  K  K   S  LL +N SRC  + ++  +NIV L + T+I
Sbjct: 27  EDTFPSKFHKNKASCGLLAVNESRCTDHQLQCENNIVGLSLETQI 71


>UniRef50_A7SVJ0 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 449

 Score = 33.1 bits (72), Expect = 7.3
 Identities = 20/56 (35%), Positives = 30/56 (53%)
 Frame = +1

Query: 427 FSTLFLYDLKV*TIIRIKAKFLK*QKSLNKSYKRLKITFYLWSGLRMSTLTISALK 594
           F++  L  LKV T I    K LK    +++  K LK+  Y+  GL+++T T   LK
Sbjct: 232 FTSQALKGLKVNTYISQGLKALKVNTYISQGLKGLKVNTYISQGLKVNTYTSQGLK 287


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 624,751,139
Number of Sequences: 1657284
Number of extensions: 11051579
Number of successful extensions: 23649
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23644
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59677054775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)