Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4b04
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    32   0.059
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    27   1.7  
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po...    27   1.7  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    27   2.9  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.9  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.9  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    26   3.9  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   5.1  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    26   5.1  
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    26   5.1  
SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces pom...    26   5.1  
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.8  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    25   6.8  
SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.8  
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ...    25   9.0  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   9.0  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 32.3 bits (70), Expect = 0.059
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +2

Query: 119  PTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANPLER 238
            P PV+N   SP  +PPK +  P   +S P  T  A PL R
Sbjct: 972  PLPVSNILSSPTSEPPKDH-PPSAPLSKPVSTSPAAPLAR 1010


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +2

Query: 116 LPT---PVANSPLSPVRQPPKSNIKPPTRISLPT 208
           LPT   P  N+P  PV   P  +I+PP  ++LPT
Sbjct: 334 LPTSNLPSQNAPARPVE--PSPSIQPPNLLNLPT 365


>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 380

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 65  NNIFDAPKTGGKGRVKSLPTPVANSPLSPVRQPPKSNIK 181
           N +  A KT  +GR+ S   PV +SP  PV    K + K
Sbjct: 327 NRLEKASKTIPQGRLDSFFKPVPSSPKKPVDTKSKGSAK 365


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = +2

Query: 71  IFDAPKTGGKGRVKSLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANP 229
           IF AP+     R  S P  +  +P+S    PP +   P  R  LP R+ S  P
Sbjct: 21  IFGAPRKREPARTVSTPAFMEPAPVSKKPLPPPTRRLP--RKPLPFRSTSLQP 71


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 113 SLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSA 223
           S+P   A S  SPV++PP      P R++  T + S+
Sbjct: 206 SVPAATAASTASPVKKPPPPAPPKPRRLAARTSSNSS 242


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
 Frame = +2

Query: 56  FRENNIFD-APKTGGKGRVKSLPTPVANSPLS-PVRQP-PK----SNIK-PPTRISLPTR 211
           F E+N F  +PK     R K+L      + L  P R P PK    S IK PP+R+ LPT 
Sbjct: 162 FEEDNFFSVSPK-----RRKNLFEKYGKTDLGKPARVPSPKKSLSSTIKSPPSRVKLPTS 216

Query: 212 TFSANP 229
             S +P
Sbjct: 217 ILSKSP 222


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
 Frame = +2

Query: 305 PEFGNKLESLPAYSDKLD----FKQERDLRMHFMSDLE-----RNIMKATLKFSTNYIMG 457
           P+FGN   SLP+ +  L+    F  ++ L      D E      N    +   ST  I  
Sbjct: 30  PQFGNTTNSLPSMNGLLNHENSFASQQSLSSSAFDDSEIVTSTANSTVVSSALSTPKIDD 89

Query: 458 YINSKDMRMTGKFASSSVK 514
             NS D+R+ G   SS  K
Sbjct: 90  AQNSDDVRVDGTRRSSRAK 108


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 83  PKTGGKGRVKSLPTPVANSPLSPVRQPP-KSNIKPPTRISLPTRTFSANP 229
           P T    R    P   A++P  P + PP  S++ PP + + P ++  + P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAP 188



 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 119 PTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANPL 232
           PTP +     P   PP+ +I PP+  S P     A P+
Sbjct: 131 PTPQSELR-PPTSAPPRPSIPPPSPASAPPIPSKAPPI 167


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 59  RENNIFDAPKT-GGKGRVKSLPTPVANSPLSPVRQP 163
           + N  +DA +T G   +V   P P   +PL+ + +P
Sbjct: 152 KHNAFYDASQTFGSTAKVAPAPAPSTKTPLANISKP 187


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 261 VKNQSSTEKMDILCRPSLVTNWKVCPRT 344
           V+N SST K  +L  PS +T   V PRT
Sbjct: 38  VENVSSTPKKGVLEDPSTLTPEVVTPRT 65


>SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 19/49 (38%), Positives = 23/49 (46%)
 Frame = +3

Query: 234 SAASAAAL*VKNQSSTEKMDILCRPSLVTNWKVCPRTATNWISNKSVIY 380
           S ASA AL V N S  +   +  R S++  WKV   T      NK  IY
Sbjct: 191 SKASAGALEVFNISHVKNPMVFLRNSVLKGWKVI-GTKPALPDNKDQIY 238


>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 368

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 302 PPEFGNKLES-LPAYSDKLDFKQERDLRMHFMSDLERNIMKA 424
           P   G+ + S LP  S  LDFKQE     H MS L  ++ K+
Sbjct: 303 PQSTGSSVSSSLPTLS--LDFKQEYSGNNHDMSGLSSSLSKS 342


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 284 KDGYFVPPEFGNKLESLPAYSDKLDFKQERDLRMHFM 394
           KD Y +P   GN +  L     K+D  ++R+ + +FM
Sbjct: 585 KDAYIIPMPSGNSVPELLDLLPKVDLPKDRNFQ-YFM 620


>SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 220

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 140 PLSPVRQPPKSNIKPPTRISLPTRTFSANPL 232
           P SP +   +S   PPT IS+P    S+NPL
Sbjct: 67  PFSPSKIMNRSISVPPTNISVP--QISSNPL 95


>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 305

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = +2

Query: 17  FLSANQQVTMNRFFRENNIFDAPKTGGKGRVKSLPTPVANSPLSPVRQPPKSNIKPPTRI 196
           + S  +  + N F   ++   +  T  K R  ++P   ++ PLS  +  P+S  + P R 
Sbjct: 159 YSSQERSSSYNNFEDASSPQSSYHTPTKRRKNAVPRKSSSPPLSSTKHAPQSTERRPVRR 218

Query: 197 S 199
           S
Sbjct: 219 S 219


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 113  SLPTPVANSPLSPVRQPPKSNIKPPTRISLP 205
            S+P+P A SP    + PP S+  PP   + P
Sbjct: 1039 SVPSPSALSPSVTPQLPPVSSRLPPVSATRP 1069


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,568,466
Number of Sequences: 5004
Number of extensions: 51741
Number of successful extensions: 188
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)