Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4b01
(763 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 4e-09
SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_39285| Best HMM Match : Proteasome (HMM E-Value=0) 36 0.027
SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009) 36 0.036
SB_50062| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0) 29 5.5
SB_25693| Best HMM Match : Exo_endo_phos (HMM E-Value=0.012) 29 5.5
SB_56011| Best HMM Match : Exo_endo_phos (HMM E-Value=0.13) 28 7.2
SB_55435| Best HMM Match : RVT_1 (HMM E-Value=7.9e-22) 28 7.2
SB_46984| Best HMM Match : Exo_endo_phos (HMM E-Value=4.2e-09) 28 7.2
SB_46241| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_43221| Best HMM Match : PHF5 (HMM E-Value=2) 28 7.2
SB_41253| Best HMM Match : Exo_endo_phos (HMM E-Value=4.5e-09) 28 7.2
SB_29894| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_15701| Best HMM Match : MT-A70 (HMM E-Value=1.6e-17) 28 7.2
SB_40728| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_24634| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00054) 28 7.2
SB_9246| Best HMM Match : RHS_repeat (HMM E-Value=5.5e-06) 28 7.2
SB_8505| Best HMM Match : CitD (HMM E-Value=0.91) 28 9.5
>SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1071
Score = 58.8 bits (136), Expect = 4e-09
Identities = 27/30 (90%), Positives = 28/30 (93%)
Frame = +2
Query: 674 EEGKKLVRDAIAAGIFNDLGSGSNVDLCVI 763
EE K+LVRD IAAGIFNDLGSGSNVDLCVI
Sbjct: 2 EEAKQLVRDGIAAGIFNDLGSGSNVDLCVI 31
>SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 467
Score = 50.4 bits (115), Expect = 2e-06
Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Frame = +2
Query: 227 GTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCG--AGTAADTEMTTQ 400
GTT + + GVI+ D+RAT + ++ + +K+ + N Y G AG AAD +
Sbjct: 28 GTTTLAFKFKHGVIVAVDSRATAGSYIASQTVKKV--IEINPYLLGTMAGGAADCSFWER 85
Query: 401 SVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGHIGAALV 526
+A Q + L + V A+ +L M++ Y+G +G ++V
Sbjct: 86 LLAKQCRIYELRNKERISVAAASKILANMVYYYKG-MGLSMV 126
Score = 40.3 bits (90), Expect = 0.002
Identities = 28/89 (31%), Positives = 43/89 (48%)
Frame = +2
Query: 485 MLFRYQGHIGAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRD 664
M F +QG ++ G D+ GP +Y + G+ ++GSGS A V ++G+K D
Sbjct: 146 MFFTFQG-----TMICGWDKKGPGLYYVDSDGTRLSNQMFSVGSGSTYAYGVMDSGYKYD 200
Query: 665 MNEEEGKKLVRDAIAAGIFNDLGSGSNVD 751
M+ EE L +I D SG V+
Sbjct: 201 MSPEEAYDLGVRSIYHATHRDAYSGGVVN 229
>SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)
Length = 215
Score = 36.3 bits (80), Expect = 0.027
Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 6/155 (3%)
Frame = +2
Query: 206 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 385
A +A K G+T VG+ + V+LG + +A + + +KI L ++ AG AD
Sbjct: 24 AQEAVKKGSTAVGVRGNNIVVLGVERKAVAK-LQEPRTVRKICTLDDHVLMAFAGLTADA 82
Query: 386 EMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY-----QGHIGAALVLGGVDRTG 550
+ + + +L V +E + + RY + G + ++ G D G
Sbjct: 83 RILVNKARVECQSHKLTVEDPVTLEYITRFIATLKQRYTQSNGRRPFGISTLIVGFDFDG 142
Query: 551 -PHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAG 652
P +Y P G+ G G +AV + G
Sbjct: 143 TPRLYQTDPSGTYHAWKVVQSG-GKNIELAVMKKG 176
>SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)
Length = 938
Score = 35.9 bits (79), Expect = 0.036
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +2
Query: 218 TKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAAD 382
T TGT+++GI + GV++ ADT + ++ +N ++ + N AG AD
Sbjct: 872 TTTGTSVLGIKFNGGVLMAADTLGSYGSLARYRNISRLMRVNENTIIGAAGDYAD 926
>SB_50062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 33.1 bits (72), Expect = 0.25
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +2
Query: 185 LAQKGFPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQ 325
L + G P P + G VG I A G +L + TRA V++ NC+
Sbjct: 84 LKRLGIPPPLLSMGGAEFVGAIRARGGLLFSKTRAARGRQVANVNCE 130
>SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1670
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +2
Query: 380 DTEMTTQSVASQLELQRLHT--GRTVPVETAATLLKRMLFRYQGH 508
D + V S E+ RLHT GR+ PVE LLK+ L + + H
Sbjct: 250 DKKDEDSKVMSSQEVSRLHTPQGRSTPVEPHLQLLKQALKQVKPH 294
>SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4275
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = +2
Query: 47 RGITFKGVRFKLKFQ*NLSNHEMASALVPEIPVPGFSFENFQRNAFLAQKGFPAPKATKT 226
+G+ KG L++ SN E + L +P+ +FE FQRN F QK P
Sbjct: 729 KGLKRKGSIVLLRYILQDSNFEDLAGLAL-LPLANNTFEVFQRNGFGFQKKVYMPSDQHP 787
Query: 227 GTTIVGI 247
G+ + G+
Sbjct: 788 GSLLRGL 794
>SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1681
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +2
Query: 359 CGAGTAADTEMTTQSVASQLELQR 430
C GTAA T +T QSVAS ++++R
Sbjct: 637 CKRGTAALTNVTKQSVASVVDIER 660
>SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1858
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 733 TQVIEYT-SSNSISDKLFSFFLIHITFPTCFKHCH 632
T +++Y SSN + K F F IH P HCH
Sbjct: 1016 TSLVDYVISSNRVQQK-FQFLKIHPLLPHISDHCH 1049
>SB_25693| Best HMM Match : Exo_endo_phos (HMM E-Value=0.012)
Length = 826
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 733 TQVIEYT-SSNSISDKLFSFFLIHITFPTCFKHCH 632
T +++Y SSN + K F F IH P HCH
Sbjct: 591 TSLVDYVISSNRVQQK-FQFLKIHPLLPHISDHCH 624
>SB_56011| Best HMM Match : Exo_endo_phos (HMM E-Value=0.13)
Length = 307
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 733 TQVIEYT-SSNSISDKLFSFFLIHITFPTCFKHCH 632
T +++Y SSN + K F F IH P HCH
Sbjct: 195 TSLVDYVISSNRVRQK-FQFLKIHPLLPHISDHCH 228
>SB_55435| Best HMM Match : RVT_1 (HMM E-Value=7.9e-22)
Length = 726
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 733 TQVIEYT-SSNSISDKLFSFFLIHITFPTCFKHCH 632
T +++Y SSN + K F F IH P HCH
Sbjct: 265 TSLVDYAISSNRVRQK-FQFLKIHPLLPHISDHCH 298
>SB_46984| Best HMM Match : Exo_endo_phos (HMM E-Value=4.2e-09)
Length = 476
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 733 TQVIEYT-SSNSISDKLFSFFLIHITFPTCFKHCH 632
T +++Y SSN + K F F IH P HCH
Sbjct: 246 TSLVDYVISSNRVRQK-FQFLKIHPLLPHISDHCH 279
>SB_46241| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 625
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 733 TQVIEYT-SSNSISDKLFSFFLIHITFPTCFKHCH 632
T +++Y SSN + K F F IH P HCH
Sbjct: 451 TSLVDYVISSNRVRQK-FQFLKIHPLLPHISDHCH 484
>SB_43221| Best HMM Match : PHF5 (HMM E-Value=2)
Length = 361
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 733 TQVIEYT-SSNSISDKLFSFFLIHITFPTCFKHCH 632
T +++Y SSN + K F F IH P HCH
Sbjct: 102 TSLVDYVISSNRVRQK-FQFLKIHPLLPHISDHCH 135
>SB_41253| Best HMM Match : Exo_endo_phos (HMM E-Value=4.5e-09)
Length = 404
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 733 TQVIEYT-SSNSISDKLFSFFLIHITFPTCFKHCH 632
T +++Y SSN + K F F IH P HCH
Sbjct: 246 TSLVDYVISSNRVRQK-FQFLKIHPLLPHISDHCH 279
>SB_29894| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 838
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 733 TQVIEYT-SSNSISDKLFSFFLIHITFPTCFKHCH 632
T +++Y SSN + K F F IH P HCH
Sbjct: 246 TSLVDYVISSNRVRQK-FQFLKIHPLLPHISDHCH 279
>SB_15701| Best HMM Match : MT-A70 (HMM E-Value=1.6e-17)
Length = 1178
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 733 TQVIEYT-SSNSISDKLFSFFLIHITFPTCFKHCH 632
T +++Y SSN + K F F IH P HCH
Sbjct: 960 TSLVDYVISSNRVRQK-FQFLKIHPLLPHISDHCH 993
>SB_40728| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1317
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 733 TQVIEYT-SSNSISDKLFSFFLIHITFPTCFKHCH 632
T +++Y SSN + K F F IH P HCH
Sbjct: 719 TSLVDYVISSNRVRQK-FQFLKIHPLLPHISDHCH 752
>SB_24634| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00054)
Length = 1012
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 733 TQVIEYT-SSNSISDKLFSFFLIHITFPTCFKHCH 632
T +++Y SSN + K F F IH P HCH
Sbjct: 837 TSLVDYVISSNRVRQK-FQFLKIHPLLPHISDHCH 870
>SB_9246| Best HMM Match : RHS_repeat (HMM E-Value=5.5e-06)
Length = 530
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 733 TQVIEYT-SSNSISDKLFSFFLIHITFPTCFKHCH 632
T +++Y SSN + K F F IH P HCH
Sbjct: 372 TSLVDYVISSNRVRQK-FQFLKIHPLLPHISDHCH 405
>SB_8505| Best HMM Match : CitD (HMM E-Value=0.91)
Length = 909
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Frame = +2
Query: 323 QKIHYLAS-NMYCCGAGTAADTEMTTQSVASQLELQR--LHTGRTVPVETAATLLKRMLF 493
QK+H + CC + LE+ +H+G +PVE L+ +L
Sbjct: 82 QKLHLVYEITALCCAFNPKNLLQKVVDLCVESLEMYNGDVHSGDGLPVEVTLDLVNYLLK 141
Query: 494 RYQGHIGAALV 526
+ GH G ++
Sbjct: 142 QESGHDGVTML 152
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,079,048
Number of Sequences: 59808
Number of extensions: 484508
Number of successful extensions: 1381
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1381
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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