Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4b01
(763 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical pr... 199 2e-51
AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome be... 100 1e-21
Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical pr... 93 2e-19
U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta... 56 2e-08
Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical pr... 52 6e-07
AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome al... 47 2e-05
Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical pr... 44 9e-05
U80442-1|AAB37663.1| 202|Caenorhabditis elegans Proteasome beta... 40 0.001
Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical pr... 38 0.006
Z81079-4|CAB03081.1| 236|Caenorhabditis elegans Hypothetical pr... 35 0.055
AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical ... 31 0.68
Z77661-2|CAB01184.4| 265|Caenorhabditis elegans Hypothetical pr... 31 1.2
AC006749-2|AAF60533.3| 731|Caenorhabditis elegans Hypothetical ... 29 3.6
>Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical
protein C47B2.4 protein.
Length = 277
Score = 199 bits (485), Expect = 2e-51
Identities = 91/204 (44%), Positives = 134/204 (65%)
Frame = +2
Query: 152 FSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKI 331
F F N RN + + G APK T TGTTIV + + G+++GAD+RAT +++DK+C+K+
Sbjct: 21 FDFSNCIRNQAMCKMGGKAPKLTSTGTTIVAVAFKGGLVMGADSRATAGNIIADKHCEKV 80
Query: 332 HYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGHI 511
H L ++Y CGAGTAAD + T+ ++ L L L+TGR V TA K+ LF YQG+I
Sbjct: 81 HKLTESIYACGAGTAADLDQVTKMLSGNLRLLELNTGRKARVITALRQAKQHLFNYQGYI 140
Query: 512 GAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKL 691
GA L++GGVD TGPH+Y +G+ P+ GSGS AA+ + E +K DM ++E +KL
Sbjct: 141 GAYLLIGGVDPTGPHLYMCSANGTTMAFPFTAQGSGSYAAITILERDFKVDMTKDEAEKL 200
Query: 692 VRDAIAAGIFNDLGSGSNVDLCVI 763
V+ A+ AG+ D SG++++L +I
Sbjct: 201 VQRALEAGMHGDNASGNSLNLVII 224
>AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome beta
subunit protein 1 protein.
Length = 239
Score = 100 bits (239), Expect = 1e-21
Identities = 51/190 (26%), Positives = 95/190 (50%), Gaps = 1/190 (0%)
Frame = +2
Query: 197 GFPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTA 376
GF + TGTT++ + Y GV++G D+R + + ++ + KI + NM C +G+A
Sbjct: 13 GFYPQEEISTGTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSA 72
Query: 377 ADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGHIGAALVLGGVD-RTGP 553
ADT+ +++ + + V + ++ + ++ L+ Y+ + A++++ G D G
Sbjct: 73 ADTQAIADIAKYHIDVYTMTENKPVTIYRSSQIFRQFLYNYREQLSASVLVAGWDEELGG 132
Query: 554 HIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFNDLG 733
+Y I G V + GSGS ++ W+ ++ EE K +V+ A+ F D
Sbjct: 133 QVYAIPIGGFVSRQRSTASGSGSTFVQGFLDSQWRPNLTLEECKAIVKQAVGLATFRDGS 192
Query: 734 SGSNVDLCVI 763
SG V L VI
Sbjct: 193 SGGVVRLAVI 202
>Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical
protein K05C4.1 protein.
Length = 284
Score = 93.1 bits (221), Expect = 2e-19
Identities = 58/189 (30%), Positives = 92/189 (48%), Gaps = 8/189 (4%)
Frame = +2
Query: 221 KTGTTIVGIIY-----AD--GVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAA 379
+ GTT + +Y AD G+I+ D+RA+ +S K+ KI + M AG AA
Sbjct: 62 RKGTTTLAFVYEPATPADKGGIIVAVDSRASSGEYISSKSVMKILDIGDRMVATMAGGAA 121
Query: 380 DTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGH-IGAALVLGGVDRTGPH 556
D + T+ VA L L ++ V A+ L+ Y+G + ++ G D+ GP
Sbjct: 122 DCQFWTRIVAKYCTLYELREKTSITVSAASKYFANTLYGYRGQGLSVGSMVAGYDKKGPQ 181
Query: 557 IYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFNDLGS 736
I+ + G +L ++GSGSL A + + +K M ++E +KL AI + D GS
Sbjct: 182 IFKVDSEGDRCQLKVCSVGSGSLNAYGILDNHYKPKMTDDEARKLGLRAIMHATYRDSGS 241
Query: 737 GSNVDLCVI 763
G +LC I
Sbjct: 242 GGVCNLCHI 250
>U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta
subunit protein 3 protein.
Length = 204
Score = 56.4 bits (130), Expect = 2e-08
Identities = 38/175 (21%), Positives = 74/175 (42%), Gaps = 3/175 (1%)
Frame = +2
Query: 224 TGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQS 403
TG T+V + + V + +D R E + +K+H + +Y AG +D +
Sbjct: 7 TGGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDARTVLEK 66
Query: 404 VASQLELQRLHTGRTVPVETAATLLKRMLF--RYQGHIGAALVLGGVDRTGPHIYCIYPH 577
+ + L L R + + + ++ + + R+ + LV G D P+I C+
Sbjct: 67 IMFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDDTNKPYICCMDTI 126
Query: 578 GSVD-KLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFNDLGSG 739
G V + +G+G + V E W+ +M +E + +I + + D SG
Sbjct: 127 GCVSAPRDFVAVGTGQEYLLGVCENFWRENMKPDELFEATAQSILSCLERDAASG 181
>Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical
protein F25H2.9 protein.
Length = 248
Score = 51.6 bits (118), Expect = 6e-07
Identities = 44/195 (22%), Positives = 88/195 (45%), Gaps = 9/195 (4%)
Frame = +2
Query: 206 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 385
A +A K G+T +GI ++GV+L A+ R+T +V+D +KI + ++ AG AD+
Sbjct: 27 AIEAVKLGSTSIGIKTSEGVLLAAEKRSTSKLMVNDA-IEKISKVDQHIGVTFAGLIADS 85
Query: 386 EMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY---------QGHIGAALVLGGV 538
+ + + R + VE + + ++ G A++ GV
Sbjct: 86 RTLVERAQIEAQNFWFTYNRKIRVEDVTQSVANLALQFGDDDVKASMSRPFGVAMLFAGV 145
Query: 539 DRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGI 718
D+ G ++ + P G+ ++G+ S A + + + +EG K+ AI +
Sbjct: 146 DQEGAKLFHLDPSGTFIDCKAKSIGAASDGAEQNLKEQYHDALTIKEGLKMAL-AILKQV 204
Query: 719 FNDLGSGSNVDLCVI 763
+ + +NV++ VI
Sbjct: 205 MEEKLNSANVEVVVI 219
>AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome alpha
subunit protein 3 protein.
Length = 250
Score = 46.8 bits (106), Expect = 2e-05
Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 6/168 (3%)
Frame = +2
Query: 206 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 385
A +A T +GI+ ++G+++ A+ + + +K++ L+ N+ C AG AD
Sbjct: 24 AMEAISHAGTCLGILSSEGIVVAAERKNVHKLLDDSVMTEKVYRLSDNISCTVAGITADA 83
Query: 386 EMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY-----QGHIGAALVLGGVDR-T 547
+ + R G +PVE L RY + G +L+ G D+
Sbjct: 84 NILINHLRWWAASYRNSYGEEMPVEQLVQNLCNEKQRYTQIGGKRPFGVSLLYIGWDKHY 143
Query: 548 GPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKL 691
G +Y P G+ +GS AA+ + + +K N EE K+L
Sbjct: 144 GYQLYQSDPSGNYTGWKATCIGSNHQAAVTLLKQEYK-SPNLEEAKQL 190
>Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical
protein C36B1.4 protein.
Length = 253
Score = 44.4 bits (100), Expect = 9e-05
Identities = 34/168 (20%), Positives = 69/168 (41%), Gaps = 6/168 (3%)
Frame = +2
Query: 206 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 385
A +A K G+T VG+ D +++G + ++ + D+ +KIH + ++ AG +AD
Sbjct: 23 AQEAVKKGSTAVGVRGKDCIVIGVEKKSIP-ALQDDRTIRKIHMIDDHVMLAFAGLSADA 81
Query: 386 EMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY-----QGHIGAALVLGGVDRTG 550
+ + + +L V V + + R+ + G ++++GG D G
Sbjct: 82 RVLVDRARIECQSYKLTLEDPVTVAYISRYIANTKQRFTQSPGRRPFGISMLIGGFDHDG 141
Query: 551 -PHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKL 691
P ++ P G+ + G G E + + +E L
Sbjct: 142 TPRLFKTEPSGAYYEYVANATGRGEKPVREYLEEQYSEENTVDEATTL 189
>U80442-1|AAB37663.1| 202|Caenorhabditis elegans Proteasome beta
subunit protein 4 protein.
Length = 202
Score = 40.3 bits (90), Expect = 0.001
Identities = 38/164 (23%), Positives = 61/164 (37%), Gaps = 7/164 (4%)
Frame = +2
Query: 236 IVGIIYADGVILGADTRA-TENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVAS 412
+VGI + VIL AD +++D K + L + G D
Sbjct: 7 LVGISTENYVILAADKATFAYGAILADSENDKEYRLGKKLTMMCIGEEGDVAQFGDWTKR 66
Query: 413 QLELQRLHTGRTVPVETAATLLKRML---FRYQGHIGAALVLGGVDRTGPHIYC---IYP 574
L+L + G V A ++R + R Q H +++GG D + Y
Sbjct: 67 NLQLYSVRNGYEVSPSCAHHFVRRSIAEGLRSQDHYTVDVLIGGYDDKEDKAFLGSVDYL 126
Query: 575 HGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAI 706
+ + PY G A+ + +K+DM E EG L+ I
Sbjct: 127 ANGLGQQPYLFRGFCGRFCYAIMDREYKKDMTEAEGLALMNKCI 170
>Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical
protein D1054.2 protein.
Length = 231
Score = 38.3 bits (85), Expect = 0.006
Identities = 43/187 (22%), Positives = 77/187 (41%), Gaps = 9/187 (4%)
Frame = +2
Query: 149 GFSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRATEN--TVVSDKNC 322
GFS F + L Q + A A K G VG+ DGV+L ATEN +V++D
Sbjct: 6 GFSLTTFSPSGKLMQIEY-ALNAVKNGQPSVGLRAKDGVVL-----ATENVGSVLTDDQ- 58
Query: 323 QKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY- 499
K+ ++ ++ C +G D + + + G +P T + ++ Y
Sbjct: 59 PKVEQISKHIGCVYSGMGPDFRILVKKARKIAMEYEMMYGEEMPTIQLVTDIAAVMQEYT 118
Query: 500 -QGHI---GAALVLGGVDRT--GPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKR 661
G + GA+L++ G D+ P ++ P G+ +G + A E +
Sbjct: 119 QSGGVRPFGASLLIAGWDKNPGRPLLFQCDPSGAYFAWKATALGKNDVNAKTFLEKRFSE 178
Query: 662 DMNEEEG 682
+ ++G
Sbjct: 179 ALELDDG 185
>Z81079-4|CAB03081.1| 236|Caenorhabditis elegans Hypothetical
protein F39H11.5 protein.
Length = 236
Score = 35.1 bits (77), Expect = 0.055
Identities = 35/183 (19%), Positives = 72/183 (39%), Gaps = 13/183 (7%)
Frame = +2
Query: 218 TKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTT 397
T TGT+++ + Y GV++ D + + KN + + + N+ G AD
Sbjct: 14 TCTGTSVIALQYKTGVVVLTDRVVSYGKMARYKNVSRQYKVNDNVLIAFGGDHADFHWLQ 73
Query: 398 QSVASQLELQRLHTGRTVPVETAATLLKRMLFR--YQGHIGAALVLGGVDR--------T 547
+ Q+ L + P L + + + LV+ GV+ +
Sbjct: 74 NVIERQVLLWKRFDQDIGPKALHGYLTSLLYAKRCKMNPVWNTLVVAGVEEEEKNNKETS 133
Query: 548 GPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKR---DMNEEEGKKLVRDAIAAGI 718
P I I G ++ + G G+ E W++ D++ EE + ++R ++ +
Sbjct: 134 TPFIGVITQKGCAYQVKHIATGLGAFLLNQAVEDEWRKKGEDLSREEAEAVLRKSLELTL 193
Query: 719 FND 727
++D
Sbjct: 194 YHD 196
>AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical
protein Y39D8B.1 protein.
Length = 1372
Score = 31.5 bits (68), Expect = 0.68
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -2
Query: 333 WIFWQFLSETTVFSVALVSAPSITPSAYIIPTIVVPVLVALGAGNPF 193
WIF L + ++S P I A + P +VP++++ G G PF
Sbjct: 687 WIFVPVLVSPRILGAVILS-PVIMSPAILTPLCMVPIILSPGVGLPF 732
>Z77661-2|CAB01184.4| 265|Caenorhabditis elegans Hypothetical
protein F40G12.2 protein.
Length = 265
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +2
Query: 302 VVSDKNCQKIHYLASNMYCC 361
V S +NC+K+H+L+SN + C
Sbjct: 210 VKSQENCEKVHFLSSNFWNC 229
>AC006749-2|AAF60533.3| 731|Caenorhabditis elegans Hypothetical
protein Y39D8B.3 protein.
Length = 731
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -2
Query: 333 WIFWQFLSETTVFSVALVSAPSITPSAYIIPTIVVPVLVALGAGNPF 193
W+F L + A+V +P + + P +VPV+++ G G PF
Sbjct: 596 WVFVPVLVSPRILG-AVVLSPIVFSPVILSPLCLVPVILSPGVGLPF 641
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,375,731
Number of Sequences: 27780
Number of extensions: 377350
Number of successful extensions: 1019
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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