Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4a18
         (424 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0394 - 17261008-17262476,17262554-17262743                       29   2.0  
08_01_0083 - 604175-605776                                             28   2.7  
08_01_0082 - 588269-588434,590800-591653                               28   2.7  
01_06_0903 + 32862551-32864752,32865341-32865535,32866219-328665...    28   3.6  
04_04_0532 + 26058100-26058229,26058355-26058559,26058678-260591...    27   4.7  
01_07_0315 - 42692539-42693260,42693357-42693609                       27   6.2  
08_02_0393 + 16621137-16621139,16621392-16621583,16622559-166226...    27   8.2  
02_01_0705 - 5259949-5263887,5266207-5266509                           27   8.2  
01_07_0317 + 42699035-42699305,42699411-42700132                       27   8.2  

>09_04_0394 - 17261008-17262476,17262554-17262743
          Length = 552

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -2

Query: 312 KPNEGRRRNRFVPSLLSDVWNVWLLIVAC 226
           KP    RR   +PS  S VW V LL+V C
Sbjct: 4   KPTRPHRRPPPLPSKTSGVWPVALLVVLC 32


>08_01_0083 - 604175-605776
          Length = 533

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 96  TPAPFFSRYHTQTQKLGLQTPPG*TSHI-QKIQEPFIDK 209
           TPAP F R+  +T  + +  P G   HI ++++ P + +
Sbjct: 218 TPAPVFRRWFVETSPVPIPMPVGKLQHIVRRLERPEVQE 256


>08_01_0082 - 588269-588434,590800-591653
          Length = 339

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 96  TPAPFFSRYHTQTQKLGLQTPPG*TSHI-QKIQEPFIDK 209
           TPAP F R+  +T  + +  P G   HI ++++ P + +
Sbjct: 221 TPAPVFRRWFVETSPVPIPMPVGKLQHIVRRLERPEVQE 259


>01_06_0903 +
           32862551-32864752,32865341-32865535,32866219-32866523,
           32866664-32866849,32867137-32867314,32867548-32867574
          Length = 1030

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = +3

Query: 42  MVLSSPSSFFNRCHIWFDTPAPFFSRYHTQT 134
           M LSSPS   +R    FDT  PF  R HTQ+
Sbjct: 624 MRLSSPSPRHSRAS--FDTAMPFTPRRHTQS 652


>04_04_0532 +
           26058100-26058229,26058355-26058559,26058678-26059157,
           26059262-26059354,26059526-26059636,26059720-26059792,
           26060072-26060208,26061040-26061097
          Length = 428

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 116 PVSHADAEARVTDAARVDLAHTEDPGAVH*QAAE 217
           P +   A  R T  A+VD A  EDPG +   A E
Sbjct: 87  PQAPPPAPTRATKKAKVDAAKNEDPGGMSAPAKE 120


>01_07_0315 - 42692539-42693260,42693357-42693609
          Length = 324

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -1

Query: 196 GSWIFCMCEVYPGGVC-NPSF 137
           G   FCMC+ YPG  C +P F
Sbjct: 79  GCKTFCMCDFYPGVSCGDPRF 99


>08_02_0393 +
           16621137-16621139,16621392-16621583,16622559-16622612,
           16623041-16623160,16623280-16623501,16623594-16623650,
           16623993-16624046,16624395-16624426,16624888-16625023,
           16625108-16625278,16625430-16625661,16626018-16626022
          Length = 425

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 232 SVFCNFGGLSMNGSWIFCMCEVYPGGVCNPSF 137
           S  CNF  LS+ G +I+ + E++   VC+ SF
Sbjct: 82  SKICNFHTLSLLGYFIYNVLEIFIIIVCSISF 113


>02_01_0705 - 5259949-5263887,5266207-5266509
          Length = 1413

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = -1

Query: 268  TVGCXECLAVNSSVFCNFGGLSMNGSWIFCMCEVYPGGVC 149
            T+ C  C  +    F NF G    G++    C    GGVC
Sbjct: 958  TIPCGIC-GMFGLTFANFSGNRDGGTFTLADCAAEEGGVC 996


>01_07_0317 + 42699035-42699305,42699411-42700132
          Length = 330

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = -1

Query: 184 FCMCEVYPGGVC-NPSF 137
           FCMC+ YPG  C +P F
Sbjct: 89  FCMCDFYPGVSCGDPRF 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,371,314
Number of Sequences: 37544
Number of extensions: 177420
Number of successful extensions: 451
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)