Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4a12
(767 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62753 Cluster: 40S ribosomal protein S6; n=203; Eukary... 346 3e-94
UniRef50_A7SGC3 Cluster: Predicted protein; n=5; Eumetazoa|Rep: ... 343 2e-93
UniRef50_Q9U762 Cluster: 40S ribosomal protein S6; n=10; Culicim... 339 4e-92
UniRef50_A0CU37 Cluster: Chromosome undetermined scaffold_28, wh... 239 4e-62
UniRef50_A4VD76 Cluster: Putative uncharacterized protein; n=1; ... 239 7e-62
UniRef50_A5K858 Cluster: 40S ribosomal protein S6, putative; n=5... 231 1e-59
UniRef50_P29327-2 Cluster: Isoform B of P29327 ; n=3; Drosophila... 198 1e-52
UniRef50_Q9NE83 Cluster: 40S ribosomal protein S6; n=9; Trypanos... 193 4e-48
UniRef50_O15598 Cluster: Ribosomal protein S6; n=6; Entamoeba hi... 192 6e-48
UniRef50_A2EFM7 Cluster: Ribosomal protein S6e, putative; n=2; T... 190 3e-47
UniRef50_Q7QSH4 Cluster: GLP_64_20707_19961; n=1; Giardia lambli... 169 7e-41
UniRef50_Q98SA3 Cluster: 40S ribosomal protein S6; n=1; Guillard... 144 2e-33
UniRef50_A0DEZ7 Cluster: Chromosome undetermined scaffold_48, wh... 144 3e-33
UniRef50_Q8SRY0 Cluster: 40S ribosomal protein S6; n=1; Encephal... 124 3e-27
UniRef50_UPI00005A146E Cluster: PREDICTED: similar to 40S riboso... 123 6e-27
UniRef50_A2A3R7 Cluster: Ribosomal protein S6; n=1; Homo sapiens... 80 7e-14
UniRef50_Q4V5Z5 Cluster: IP07914p; n=1; Drosophila melanogaster|... 62 5e-12
UniRef50_UPI0000DC1AEC Cluster: UPI0000DC1AEC related cluster; n... 67 5e-10
UniRef50_Q5JDK8 Cluster: 30S ribosomal protein S6e; n=1; Thermoc... 65 2e-09
UniRef50_Q8U3H8 Cluster: 30S ribosomal protein S6e; n=4; Archaea... 64 4e-09
UniRef50_Q2NGM7 Cluster: 30S ribosomal protein S6e; n=2; Methano... 62 1e-08
UniRef50_O29739 Cluster: 30S ribosomal protein S6e; n=7; Euryarc... 62 1e-08
UniRef50_UPI00015BAF12 Cluster: SSU ribosomal protein S6E; n=1; ... 62 1e-08
UniRef50_Q3LVW0 Cluster: Ribosomal protein S6; n=1; Bigelowiella... 59 1e-07
UniRef50_Q01CM6 Cluster: Chromosome 03 contig 1, DNA sequence; n... 59 1e-07
UniRef50_Q9HMJ5 Cluster: 30S ribosomal protein S6e; n=6; Halobac... 59 1e-07
UniRef50_Q980A6 Cluster: 30S ribosomal protein S6e; n=5; Sulfolo... 55 2e-06
UniRef50_Q6LXY7 Cluster: 30S ribosomal protein S6e; n=4; Archaea... 55 2e-06
UniRef50_A2BJZ7 Cluster: 30S ribosomal protein S6e; n=2; Desulfu... 52 2e-05
UniRef50_A7IAP8 Cluster: Ribosomal protein S6e; n=2; Candidatus ... 50 8e-05
UniRef50_Q9Y9B6 Cluster: 30S ribosomal protein S6e; n=1; Aeropyr... 48 3e-04
UniRef50_Q8ZX25 Cluster: 30S ribosomal protein S6e; n=5; Thermop... 48 3e-04
UniRef50_Q978W7 Cluster: 30S ribosomal protein S6e; n=5; Thermop... 46 0.001
UniRef50_A0RYX5 Cluster: Ribosomal protein S6E; n=1; Cenarchaeum... 45 0.002
UniRef50_Q8PU79 Cluster: 30S ribosomal protein S6e; n=8; Euryarc... 44 0.003
UniRef50_A6C4P7 Cluster: Pseudouridine synthase; n=1; Planctomyc... 43 0.010
UniRef50_A7DQN0 Cluster: Ribosomal protein S6e; n=1; Candidatus ... 41 0.039
UniRef50_Q74MJ5 Cluster: 30S ribosomal protein S6e; n=1; Nanoarc... 40 0.090
UniRef50_Q87BM0 Cluster: Putative uncharacterized protein; n=1; ... 35 1.9
UniRef50_Q6CGN4 Cluster: Similarity; n=4; Eukaryota|Rep: Similar... 34 3.4
UniRef50_Q8TRJ6 Cluster: Glycosyltransferase; n=1; Methanosarcin... 34 3.4
UniRef50_A6L045 Cluster: Putative uncharacterized protein; n=1; ... 33 5.9
UniRef50_O86476 Cluster: Clumping factor B precursor; n=31; Stap... 33 5.9
UniRef50_Q6N427 Cluster: Phytoene dehydrogenase-related protein;... 33 7.8
>UniRef50_P62753 Cluster: 40S ribosomal protein S6; n=203;
Eukaryota|Rep: 40S ribosomal protein S6 - Homo sapiens
(Human)
Length = 249
Score = 346 bits (851), Expect = 3e-94
Identities = 175/242 (72%), Positives = 196/242 (80%), Gaps = 1/242 (0%)
Frame = +2
Query: 41 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 220
MKLN+S+PATGCQKL EV DE KLR FYEKRM EV AD LG+EWKGYV+R++GGNDKQG
Sbjct: 1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQG 60
Query: 221 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 400
FPMKQGVLT+ RVRLL+SKGHSCYRPRR GERKRKSVRGCIVDANLSVL LVIV+KG ++
Sbjct: 61 FPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKD 120
Query: 401 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKI 580
IPGLTD VPRRLGPKRAS+IRKLFNLSKEDDVR+YVV++ L KEGK KPR KAPKI
Sbjct: 121 IPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYVVRKPL-NKEGK---KPRTKAPKI 176
Query: 581 QRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKESKVRRQEEI-KRRRSAS 757
QRLVTP VLQ AEYAKLLA+R KE+K +RQE+I KRRR +S
Sbjct: 177 QRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSS 236
Query: 758 MR 763
+R
Sbjct: 237 LR 238
>UniRef50_A7SGC3 Cluster: Predicted protein; n=5; Eumetazoa|Rep:
Predicted protein - Nematostella vectensis
Length = 245
Score = 343 bits (844), Expect = 2e-93
Identities = 163/243 (67%), Positives = 192/243 (79%), Gaps = 1/243 (0%)
Frame = +2
Query: 41 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 220
MKLN+SYP TGCQKL E+ DE K+R FY+KRM EV + LGDEWKGYV R+ GGNDKQG
Sbjct: 1 MKLNISYPVTGCQKLIEIEDERKVRSFYDKRMAMEVSGECLGDEWKGYVFRITGGNDKQG 60
Query: 221 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 400
FPMKQG++TN RVRLL+SKGHSCYRPRR GERKRKSVRGCIVD+ LSVL+LVIV+KG Q+
Sbjct: 61 FPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSQLSVLSLVIVKKGEQD 120
Query: 401 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKI 580
IPGLTD +PRRLGPKR KIRK+FNLSKEDDVR+YV++R LP KEGK K + KAPKI
Sbjct: 121 IPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVRQYVIRRPLPEKEGK---KAKSKAPKI 177
Query: 581 QRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKESKVRRQEEI-KRRRSAS 757
QRLVTPVVLQ A+YAKLLA+R KE+K +R E++ K+RR++S
Sbjct: 178 QRLVTPVVLQRKRKRLALKRQRAQKCKQEAADYAKLLAKRAKEAKEKRHEQLMKKRRASS 237
Query: 758 MRD 766
+RD
Sbjct: 238 LRD 240
>UniRef50_Q9U762 Cluster: 40S ribosomal protein S6; n=10;
Culicimorpha|Rep: 40S ribosomal protein S6 - Aedes
albopictus (Forest day mosquito)
Length = 349
Score = 339 bits (834), Expect = 4e-92
Identities = 165/242 (68%), Positives = 192/242 (79%)
Frame = +2
Query: 41 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 220
MKLNVS+PATG QK FEV+D+HKLR FY+KRMGAE+ AD LGDEWKGYV ++AGGNDKQG
Sbjct: 1 MKLNVSFPATGAQKTFEVMDDHKLRHFYDKRMGAEITADHLGDEWKGYVFKIAGGNDKQG 60
Query: 221 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 400
FPMKQGVLTN+RVRLL+ KGHSCYRPRR GERKRKSVRGCIVD NLS LAL++V+KG ++
Sbjct: 61 FPMKQGVLTNTRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDQNLSALALIVVKKGEKD 120
Query: 401 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKI 580
IPGLTD V RRLGPKRAS IRKL+NL+KEDDVR+YVVKR LP K+GK KPR KAPKI
Sbjct: 121 IPGLTDTTVLRRLGPKRASNIRKLYNLTKEDDVRQYVVKRPLPEKDGK---KPRTKAPKI 177
Query: 581 QRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKESKVRRQEEIKRRRSASM 760
QRL+TPVVLQ +EAEY K+L R+++ ++RR R R +SM
Sbjct: 178 QRLITPVVLQRKRHRLAIKKRRVESRKEAEAEYMKILHLRRRQERIRR-----RSRLSSM 232
Query: 761 RD 766
RD
Sbjct: 233 RD 234
>UniRef50_A0CU37 Cluster: Chromosome undetermined scaffold_28, whole
genome shotgun sequence; n=6; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_28,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 315
Score = 239 bits (586), Expect = 4e-62
Identities = 115/188 (61%), Positives = 142/188 (75%), Gaps = 3/188 (1%)
Frame = +2
Query: 41 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 220
MK N+SYP TG QK E+ D+ K IF++KRMG VEAD LG+E+KGYVL++ GGNDKQG
Sbjct: 1 MKFNISYPLTGAQKTVEIDDDKKCSIFFDKRMGQVVEADNLGEEYKGYVLKITGGNDKQG 60
Query: 221 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 400
FPM+QGVL RVR+LM KGH YRPR+DGE KRKS+RGCIV ++ VLAL +V+KGA E
Sbjct: 61 FPMRQGVLFKGRVRILMRKGHKGYRPRKDGEMKRKSIRGCIVGQDIRVLALQVVKKGANE 120
Query: 401 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDD---VRRYVVKRVLPAKEGKENAKPRHKA 571
I GLTD NVPRRLGPKR +K+R+LF K D V++ +++R K+GK+ R KA
Sbjct: 121 IAGLTDQNVPRRLGPKRLTKLRRLFGFKKADGVAIVQKNLIRRTWTTKDGKK----RQKA 176
Query: 572 PKIQRLVT 595
PKIQRLVT
Sbjct: 177 PKIQRLVT 184
>UniRef50_A4VD76 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 293
Score = 239 bits (584), Expect = 7e-62
Identities = 118/226 (52%), Positives = 152/226 (67%), Gaps = 3/226 (1%)
Frame = +2
Query: 41 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 220
MK N+SYP TG QK E+ D+ K IF +K+MG EVE D LGDE+KGYV ++AGGNDK G
Sbjct: 1 MKFNISYPLTGAQKCIEIDDDKKCNIFMDKKMGQEVEGDTLGDEFKGYVFKIAGGNDKDG 60
Query: 221 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 400
FPMKQGV+ RVRLL+S+GHSC+ RR G RKRKSVRGCIV ++ VLAL IV+KG E
Sbjct: 61 FPMKQGVMVRGRVRLLLSEGHSCFTSRRSGFRKRKSVRGCIVGPDMRVLALQIVKKGVAE 120
Query: 401 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDD---VRRYVVKRVLPAKEGKENAKPRHKA 571
I GLT +PR+LGPKRA+ I+KLF L KEDD +++ V++R +GK+ R K
Sbjct: 121 IDGLTTVTLPRKLGPKRANNIKKLFGLKKEDDPILIKKSVIRRTFKTAKGKD----RTKC 176
Query: 572 PKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKE 709
PKIQRL+TP + +++ EY K L++ KK+
Sbjct: 177 PKIQRLITPERILRKKVYKAEKTQRYVKTNAAKEEYEKFLSEWKKQ 222
>UniRef50_A5K858 Cluster: 40S ribosomal protein S6, putative; n=5;
Plasmodium|Rep: 40S ribosomal protein S6, putative -
Plasmodium vivax
Length = 391
Score = 231 bits (565), Expect = 1e-59
Identities = 120/236 (50%), Positives = 149/236 (63%)
Frame = +2
Query: 41 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 220
MKLN+S P QK E+ DE KL F EKR+G V D +G+E+ GYV R+ GGNDKQG
Sbjct: 42 MKLNISNPLNNVQKSIEIDDEKKLLPFMEKRIGNVVPGDSIGEEFLGYVFRITGGNDKQG 101
Query: 221 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 400
FPM QGVLTN+RVRLL KG CYRPR+ GE++RKSVRGCIV +LS L L +V+KG E
Sbjct: 102 FPMMQGVLTNNRVRLLFKKGMKCYRPRKKGEKRRKSVRGCIVGQDLSALNLTLVKKGTNE 161
Query: 401 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKI 580
IPGLTD V ++LGPKRA+KIRKLFNL K DDVR+YV+ R + +N K R PKI
Sbjct: 162 IPGLTDKAVGKKLGPKRATKIRKLFNLDKTDDVRKYVIGRAI-----SKNGKNRFIKPKI 216
Query: 581 QRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKESKVRRQEEIKRRR 748
QRLVT L EY K+L + + E + E+ +++
Sbjct: 217 QRLVTEKRLLRKRTLIAKKEKRRLEKKKVIKEYKKVLNKYRNELLTKTDEDAGKKK 272
>UniRef50_P29327-2 Cluster: Isoform B of P29327 ; n=3; Drosophila
melanogaster|Rep: Isoform B of P29327 - Drosophila
melanogaster (Fruit fly)
Length = 200
Score = 198 bits (484), Expect(2) = 1e-52
Identities = 106/179 (59%), Positives = 125/179 (69%)
Frame = +2
Query: 41 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 220
MKLNVSYPATGCQKLFEVVDEHKLR+FYEKRMG VEAD LGDEWKGY LR+AGGNDKQG
Sbjct: 1 MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60
Query: 221 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 400
FPMKQGVLT+ R+RLL K HSC+ PR + RK K+VR V+AN+S L LV+++K
Sbjct: 61 FPMKQGVLTHGRLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKKNPS- 118
Query: 401 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPK 577
P RLGP R+S I K++ L +EDD V+P K + + K R A K
Sbjct: 119 ---------PCRLGPVRSSNISKIYYLCEEDD-------EVIPVKLQRRHQKKRQNATK 161
Score = 31.5 bits (68), Expect(2) = 1e-52
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +2
Query: 671 AEYAKLLAQRKKESKVRRQEEIKRRRSAS 757
AEY KLL +RKKESK R + R+ S
Sbjct: 165 AEYVKLLVKRKKESKANRGRYVTIRKPKS 193
>UniRef50_Q9NE83 Cluster: 40S ribosomal protein S6; n=9;
Trypanosomatidae|Rep: 40S ribosomal protein S6 -
Leishmania major
Length = 249
Score = 193 bits (471), Expect = 4e-48
Identities = 106/244 (43%), Positives = 149/244 (61%), Gaps = 3/244 (1%)
Frame = +2
Query: 41 MKLNVSYPATGCQKLFEVVDEHKLRI-FYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQ 217
MKLN++YP G K FE+ DE R+ + R+G EV+ G E+KGY+ R+ GG+DK
Sbjct: 1 MKLNIAYPRNGTVKQFEISDEVLRRVQLQDYRLGNEVDGAIFGSEFKGYIFRLRGGSDKD 60
Query: 218 GFPMKQGVLTNSRVRLLMSKGHSCYRPRR--DGERKRKSVRGCIVDANLSVLALVIVRKG 391
GFPM GVL +SRV LL+ +G + R GER+RK+VRGC++ ++++++ + I + G
Sbjct: 61 GFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTISKVG 120
Query: 392 AQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKA 571
Q I G+TD PRRLGPKRASKIRKLFNLS+ +DVR+YVV+R + K GK K R KA
Sbjct: 121 DQPIEGVTDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYVVRRRV-VKSGK---KDRLKA 176
Query: 572 PKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKESKVRRQEEIKRRRS 751
PKIQRL+TP V + EY +L+A ++ + R + R+
Sbjct: 177 PKIQRLITPRVKARRAKKAKDAIAKVRASAAERREYLRLIASNRRALRQRDHSKKHTRKV 236
Query: 752 ASMR 763
+ R
Sbjct: 237 HAQR 240
>UniRef50_O15598 Cluster: Ribosomal protein S6; n=6; Entamoeba
histolytica|Rep: Ribosomal protein S6 - Entamoeba
histolytica
Length = 162
Score = 192 bits (469), Expect = 6e-48
Identities = 87/159 (54%), Positives = 121/159 (76%)
Frame = +2
Query: 44 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGF 223
K+NV+YPATG K F+ +E R F +KR+G EV+A LGDE+KGY+L++ GG DK GF
Sbjct: 1 KINVAYPATGRIKKFDFEEEKNYRPFLDKRIGQEVDASSLGDEFKGYILKITGGCDKDGF 60
Query: 224 PMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEI 403
PM GV TN+RVRLL+ + CY+P R+GER+RK+VRG IV ++SVL ++V+KG EI
Sbjct: 61 PMMTGVATNNRVRLLLDGRNGCYKPLRNGERRRKTVRGAIVAGDISVLNTIVVKKGEGEI 120
Query: 404 PGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR 520
G+T+ +P R GP+RAS RKLFNLS++DDV+++V++R
Sbjct: 121 EGVTNDALPMRAGPQRASHFRKLFNLSQKDDVKKFVIRR 159
>UniRef50_A2EFM7 Cluster: Ribosomal protein S6e, putative; n=2;
Trichomonas vaginalis G3|Rep: Ribosomal protein S6e,
putative - Trichomonas vaginalis G3
Length = 216
Score = 190 bits (463), Expect = 3e-47
Identities = 96/224 (42%), Positives = 138/224 (61%), Gaps = 1/224 (0%)
Frame = +2
Query: 41 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 220
M++ ++YP G Q + ++ D L YEKR+G ++E ++LG ++KGY+ R+ GG DKQG
Sbjct: 1 MRITLAYPENGTQVVVDIDDPAALNALYEKRVGQDIEGEKLGGQFKGYLFRIGGGFDKQG 60
Query: 221 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 400
FPMKQGV+T R+RLL+ G SCYRPR+DGERKRK+VRGCI+ +S L V+++KG +E
Sbjct: 61 FPMKQGVITPRRIRLLLKTGASCYRPRKDGERKRKTVRGCIISDEISALHCVVLQKGEKE 120
Query: 401 IPGLTDGNVPRRLGPKRASKIRKLFNLS-KEDDVRRYVVKRVLPAKEGKENAKPRHKAPK 577
I GLT VPRR GPKRAS +R +F ++ + D + V+KR K GK +PK
Sbjct: 121 IDGLTTTAVPRRFGPKRASTLRAMFGITDSKFDASKLVLKR--EVKPGK------FTSPK 172
Query: 578 IQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKE 709
+QRL+T + +Y LL Q++K+
Sbjct: 173 VQRLITARRVARKNRMLKERKEKREATKKKAEQYQALLKQQQKQ 216
>UniRef50_Q7QSH4 Cluster: GLP_64_20707_19961; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_64_20707_19961 - Giardia lamblia
ATCC 50803
Length = 248
Score = 169 bits (411), Expect = 7e-41
Identities = 96/238 (40%), Positives = 134/238 (56%), Gaps = 5/238 (2%)
Frame = +2
Query: 44 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGF 223
K+N+S P TG K + D K + + RM +E + LG+E+ G R+ GGND QGF
Sbjct: 8 KVNISNPVTGANKSLMIEDFRKSQTIHGLRMASEFDGAALGEEYAGCTFRITGGNDAQGF 67
Query: 224 PMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEI 403
PM QGVL + R RLL+ +G CY RR+GERKRKS+RGCIV +L L++V+V G + +
Sbjct: 68 PMYQGVLKSQRARLLLRQGAKCYLHRRNGERKRKSIRGCIVGPDLHALSVVLVDAGDKTL 127
Query: 404 PGLTDGNVPRRLGPKRASKIRKLFNL--SKEDDVRRYVVKRV---LPAKEGKENAKPRHK 568
PGLTD VP+RL PKRASKIR+LF L +K D + +V + L + +N + + K
Sbjct: 128 PGLTDVVVPKRLVPKRASKIRRLFGLPTTKVDPKDQMLVCELIKELGHEVTLKNGEKKLK 187
Query: 569 APKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKESKVRRQEEIKR 742
PK+QR+VT EY LL++ K+ +R + KR
Sbjct: 188 YPKVQRVVTDEKYARKQRVIAEKKEIMRKSLQQLEEYKALLSRMGKQHNIRIYKPAKR 245
>UniRef50_Q98SA3 Cluster: 40S ribosomal protein S6; n=1; Guillardia
theta|Rep: 40S ribosomal protein S6 - Guillardia theta
(Cryptomonas phi)
Length = 209
Score = 144 bits (350), Expect = 2e-33
Identities = 78/192 (40%), Positives = 120/192 (62%), Gaps = 2/192 (1%)
Frame = +2
Query: 41 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 220
MK N++ P+TG Q E+ DE KLRI Y K++ ++++ +G EW + + GG DKQG
Sbjct: 1 MKFNIANPSTGVQHTIEIDDEDKLRILYGKKLTSKIDGKIIGKEWDKSIFIITGGQDKQG 60
Query: 221 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 394
FPMK+G+L+ SRV++L+ KG + R + GER RKSVRGCIV +SVL + ++
Sbjct: 61 FPMKEGILSPSRVKILLKKGSTGCRGYKMKKGERCRKSVRGCIVSPEISVLNIKLLTNKN 120
Query: 395 QEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAP 574
++ +T+ N + L KR+S +RK+ L+K DD+R++ +K AK+ K
Sbjct: 121 DDLL-ITNKNSEKTLTHKRSSNLRKVLCLTKTDDIRKHYIK---IAKDFKNKV------- 169
Query: 575 KIQRLVTPVVLQ 610
KIQRL+TP+ +Q
Sbjct: 170 KIQRLITPIKIQ 181
>UniRef50_A0DEZ7 Cluster: Chromosome undetermined scaffold_48, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_48,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 304
Score = 144 bits (348), Expect = 3e-33
Identities = 80/137 (58%), Positives = 94/137 (68%), Gaps = 2/137 (1%)
Frame = +2
Query: 191 RVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLA 370
R GGNDKQG VL RVR+LM KGH YRPR+DGE KRKS+RGCIV ++ VLA
Sbjct: 62 RFTGGNDKQG------VLFKGRVRILMRKGHKGYRPRKDGEMKRKSIRGCIVGQDIRVLA 115
Query: 371 LVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKE-GKE 547
L +V+KGA EI GLTD NVPRRLGPKR +K+R+LF K D RV+ ++E G +
Sbjct: 116 LQVVKKGANEIAGLTDQNVPRRLGPKRLTKLRRLFGFKKAD--------RVISSEEHGPQ 167
Query: 548 N-AKPRHKAPKIQRLVT 595
K R KAPKIQRLVT
Sbjct: 168 RYGKKRQKAPKIQRLVT 184
>UniRef50_Q8SRY0 Cluster: 40S ribosomal protein S6; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S6 -
Encephalitozoon cuniculi
Length = 203
Score = 124 bits (298), Expect = 3e-27
Identities = 65/170 (38%), Positives = 107/170 (62%), Gaps = 2/170 (1%)
Frame = +2
Query: 83 LFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVR 262
+FE+ +++R+ Y+K++G + + LG+E++G ++ + GG+D QGFPM G LT RVR
Sbjct: 1 MFEIERRNEVRL-YDKKIGDQFDGGILGEEFEGTIMEITGGDDYQGFPMVSGHLTKKRVR 59
Query: 263 LLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLG 442
L+SKG + YR RR G R+RKSVRG IV + VL L+I+R G +EI GLT+
Sbjct: 60 PLLSKGDAGYRCRRKGVRRRKSVRGSIVSEEICVLNLIILRPGEKEIDGLTNAVNDVSHL 119
Query: 443 PKRASKIRKLFNLSKEDDVRRYVVKRVLPAK--EGKENAKPRHKAPKIQR 586
P++ K+RK+F + E+ ++ +L ++ + K+ K RH +++R
Sbjct: 120 PRKEKKLRKMFGVPDEEKNVVGYIRNILKSECDDPKKIPKIRHNGKRMKR 169
>UniRef50_UPI00005A146E Cluster: PREDICTED: similar to 40S ribosomal
protein S6; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S6 - Canis familiaris
Length = 154
Score = 123 bits (296), Expect = 6e-27
Identities = 53/77 (68%), Positives = 64/77 (83%)
Frame = +2
Query: 41 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 220
MKLN+S+PATGCQKL E DE K R FYEK M +EV AD LG+EWKGY++R++GGNDKQG
Sbjct: 1 MKLNISFPATGCQKLIEADDERKPRTFYEKHMASEVAADALGEEWKGYMVRISGGNDKQG 60
Query: 221 FPMKQGVLTNSRVRLLM 271
FPMKQ VLT+ R+ LL+
Sbjct: 61 FPMKQDVLTHDRIHLLL 77
Score = 63.3 bits (147), Expect = 6e-09
Identities = 38/71 (53%), Positives = 47/71 (66%), Gaps = 6/71 (8%)
Frame = +2
Query: 395 QEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDD-----VRRYVVKRVLP-AKEGKENAK 556
++IPGLTD PR +GPKRAS+IRKLFNLSKEDD + R + KR+ KE KE K
Sbjct: 80 KDIPGLTDTTEPRHVGPKRASRIRKLFNLSKEDDAAQNSILRKIRKRIYKRMKEAKE--K 137
Query: 557 PRHKAPKIQRL 589
+ + K QRL
Sbjct: 138 RQEQIAKRQRL 148
>UniRef50_A2A3R7 Cluster: Ribosomal protein S6; n=1; Homo
sapiens|Rep: Ribosomal protein S6 - Homo sapiens (Human)
Length = 91
Score = 79.8 bits (188), Expect = 7e-14
Identities = 35/46 (76%), Positives = 38/46 (82%)
Frame = +2
Query: 41 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWK 178
MKLN+S+PATGCQKL EV DE KLR FYEKRM EV AD LG+EWK
Sbjct: 1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWK 46
>UniRef50_Q4V5Z5 Cluster: IP07914p; n=1; Drosophila
melanogaster|Rep: IP07914p - Drosophila melanogaster
(Fruit fly)
Length = 147
Score = 62.5 bits (145), Expect(2) = 5e-12
Identities = 43/108 (39%), Positives = 59/108 (54%)
Frame = +2
Query: 254 RVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPR 433
R+RLL K HSC+ PR + RK K+VR V+AN+S L LV+++K P
Sbjct: 19 RLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKKNPS----------PC 67
Query: 434 RLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPK 577
RLGP R+S I K++ L +EDD V+P K + + K R A K
Sbjct: 68 RLGPVRSSNISKIYYLCEEDD-------EVIPVKLQRRHQKKRQNATK 108
Score = 31.5 bits (68), Expect(2) = 5e-12
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +2
Query: 671 AEYAKLLAQRKKESKVRRQEEIKRRRSAS 757
AEY KLL +RKKESK R + R+ S
Sbjct: 112 AEYVKLLVKRKKESKANRGRYVTIRKPKS 140
>UniRef50_UPI0000DC1AEC Cluster: UPI0000DC1AEC related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC1AEC UniRef100 entry -
Rattus norvegicus
Length = 227
Score = 66.9 bits (156), Expect = 5e-10
Identities = 64/183 (34%), Positives = 93/183 (50%), Gaps = 3/183 (1%)
Frame = +2
Query: 44 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGF 223
KLN+S+ Q L EV + KLR FYEK M E+ + +E N + F
Sbjct: 2 KLNISFLLIVYQILTEVDGKCKLRAFYEKCMTTEITVNFSCEE-----------NADKIF 50
Query: 224 PMKQGVLTNSRVRLLMSKGHS-CYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 400
MKQ VL + RV LL++ HS Y+P R E S++ V +S+L +VI+ G ++
Sbjct: 51 SMKQEVLIHFRVHLLLNNLHSYIYKPLRTREMNYTSLQDA-VKLPISLLNMVIIINGRKD 109
Query: 401 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAK--EGKENAKPRHKAP 574
IPG T +R PKR +I+ F++S +K VL K + K++ KPR K
Sbjct: 110 IPGQT-----KRWAPKRWRRIQS-FSVS---------LKTVLSTKKPQNKDSKKPRPKTH 154
Query: 575 KIQ 583
K+Q
Sbjct: 155 KVQ 157
>UniRef50_Q5JDK8 Cluster: 30S ribosomal protein S6e; n=1;
Thermococcus kodakarensis KOD1|Rep: 30S ribosomal
protein S6e - Pyrococcus kodakaraensis (Thermococcus
kodakaraensis)
Length = 125
Score = 64.9 bits (151), Expect = 2e-09
Identities = 43/125 (34%), Positives = 66/125 (52%), Gaps = 9/125 (7%)
Frame = +2
Query: 35 AVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLG---DEWKGYV------ 187
A KL +S P G K E+ ++ +R+G E+ A +LG E G
Sbjct: 2 ATFKLVISNPKNGVAKQVEISGPEADKLI-GRRIGEEIPASELGLNLSEIFGEEIPADAK 60
Query: 188 LRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVL 367
L++ GG DK GFPM+ V RV++L+S+G +RPR GER++K+V G + N+ +
Sbjct: 61 LKITGGTDKDGFPMRPDVHGPRRVKILLSRGPG-FRPRERGERRKKTVHGNTISPNIVQV 119
Query: 368 ALVIV 382
+ IV
Sbjct: 120 NMKIV 124
>UniRef50_Q8U3H8 Cluster: 30S ribosomal protein S6e; n=4;
Archaea|Rep: 30S ribosomal protein S6e - Pyrococcus
furiosus
Length = 125
Score = 64.1 bits (149), Expect = 4e-09
Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 9/110 (8%)
Frame = +2
Query: 35 AVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQL--------GDEWKGYV- 187
A KL +S P +G K E+ ++ KR+G ++ A +L G E+ V
Sbjct: 2 ATFKLVISDPKSGIAKQVEITGAETEKLI-GKRIGDQIPAKELNINLNELFGKEFPEDVK 60
Query: 188 LRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRG 337
L + GG DK GFPM+ + RVR+L+SKG +RP+ GER++K+VRG
Sbjct: 61 LEIRGGTDKDGFPMRPDIHGPRRVRVLLSKGPG-FRPKEKGERRKKTVRG 109
>UniRef50_Q2NGM7 Cluster: 30S ribosomal protein S6e; n=2;
Methanobacteriaceae|Rep: 30S ribosomal protein S6e -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 130
Score = 62.5 bits (145), Expect = 1e-08
Identities = 33/91 (36%), Positives = 55/91 (60%)
Frame = +2
Query: 131 RMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDG 310
++G E LG KGY LR+ GG+DK GFPMK+ V R + L++ G + ++P + G
Sbjct: 30 KIGEEFNGGVLG--LKGYKLRITGGSDKNGFPMKEDVDGTRRFKSLVN-GGTGFKPTKKG 86
Query: 311 ERKRKSVRGCIVDANLSVLALVIVRKGAQEI 403
R+RK+VRG + ++S + + + +G Q +
Sbjct: 87 LRRRKTVRGNTIADDISQINVKVSERGEQTL 117
>UniRef50_O29739 Cluster: 30S ribosomal protein S6e; n=7;
Euryarchaeota|Rep: 30S ribosomal protein S6e -
Archaeoglobus fulgidus
Length = 129
Score = 62.5 bits (145), Expect = 1e-08
Identities = 40/115 (34%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Frame = +2
Query: 53 VSYPATG--CQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFP 226
+S P TG QK+ E + ++L K++G +V + + D Y L++ GG D+ GFP
Sbjct: 7 ISDPKTGRAYQKVVEGANANRL---IGKQIG-DVISGTIVDLPPDYELKITGGTDRDGFP 62
Query: 227 MKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKG 391
M+ + +R RLL+S G +RP+ G RKRK VRG ++ ++ + V+V+ G
Sbjct: 63 MRPDLPGTARRRLLLSGGVG-FRPKEKGLRKRKGVRGRVISKDILQINTVVVKHG 116
>UniRef50_UPI00015BAF12 Cluster: SSU ribosomal protein S6E; n=1;
Ignicoccus hospitalis KIN4/I|Rep: SSU ribosomal protein
S6E - Ignicoccus hospitalis KIN4/I
Length = 236
Score = 62.1 bits (144), Expect = 1e-08
Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 2/105 (1%)
Frame = +2
Query: 80 KLFEV-VDEHKLRIFYEKRMGAEVEADQLGDEW-KGYVLRVAGGNDKQGFPMKQGVLTNS 253
K F++ ++ R F KR+G V A LG E KG L + GG+D+ GFPM+ +
Sbjct: 133 KAFQITIEGENARKFIGKRIGETVPASILGIETLKGLQLEIRGGSDESGFPMRPDIPGPV 192
Query: 254 RVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRK 388
+ R L+S G + PR GER+RK+VRG + ++ + IV++
Sbjct: 193 KKRALLS-GPPGFWPREKGERRRKTVRGNTISEDIVQINTKIVKQ 236
>UniRef50_Q3LVW0 Cluster: Ribosomal protein S6; n=1; Bigelowiella
natans|Rep: Ribosomal protein S6 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 239
Score = 58.8 bits (136), Expect = 1e-07
Identities = 43/147 (29%), Positives = 77/147 (52%), Gaps = 2/147 (1%)
Frame = +2
Query: 41 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 220
MK+N++ P G Q + DE I K +G +E LG+++ + GG+DKQG
Sbjct: 1 MKINIADPILGTQYSIKRDDEFIEHIIGRK-IGDTIEGSILGEDFSRNEFLINGGHDKQG 59
Query: 221 FPMKQGVLTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGA 394
F +K+ + T R+++ + KG R +R K+++VRG I+ + +S + LV +
Sbjct: 60 FLLKKNLNTFERLKINVKKGSLGNRSHFKRKNLTKKRTVRGGILSSEISSINLVKLPNNV 119
Query: 395 QEIPGLTDGNVPRRLGPKRASKIRKLF 475
+E + ++L KR +K++ LF
Sbjct: 120 KE--SSVFPSKEQKLA-KRVTKLKTLF 143
>UniRef50_Q01CM6 Cluster: Chromosome 03 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 03 contig 1, DNA
sequence - Ostreococcus tauri
Length = 211
Score = 58.8 bits (136), Expect = 1e-07
Identities = 37/119 (31%), Positives = 65/119 (54%), Gaps = 4/119 (3%)
Frame = -2
Query: 511 DITTYIIFFAKVEQLTDFGSTFGT*TAGYISISQSRNFLGTLAHNNKSQDREIGVNNTST 332
D+ +IFF + E+LT+ T T + I ++R+ L N++ Q + ++ +T
Sbjct: 95 DVLADVIFFGQSEELTNLARTLRTTETRHFGIGEARDVGVALLDNDQVQHGNVLGDDATT 154
Query: 331 ----N*FTFSLSIAARSVT*VAL*HQKTNTAVCQDALFHRESLLVVAASDTKYIALPFI 167
+ FT + ++AA + AL H++ +T V Q AL H E+LLVV D + ++LPF+
Sbjct: 155 ARLASAFTLASAVAAEAAR--ALGHEQEHTLVRQHALLHAEALLVVTTHDLEDVSLPFL 211
>UniRef50_Q9HMJ5 Cluster: 30S ribosomal protein S6e; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S6e -
Halobacterium salinarium (Halobacterium halobium)
Length = 131
Score = 58.8 bits (136), Expect = 1e-07
Identities = 39/126 (30%), Positives = 66/126 (52%)
Frame = +2
Query: 35 AVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDK 214
A ++ V+ P +G FEV D F + +GA V+ +G + GY + + GG+D
Sbjct: 2 ATFQVAVADPESGRTYQFEV-DGQDANRFIGREIGAAVDGGAVGLD--GYTVEITGGSDD 58
Query: 215 QGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 394
G PM++ V + + +L+ +G + + P DGERKR +VRG V ++ L + I G
Sbjct: 59 AGRPMREDVDGSDLMEVLL-EGGAGFNPDEDGERKRVTVRGKEVSEAVAQLNVAIDEHGE 117
Query: 395 QEIPGL 412
+ + L
Sbjct: 118 EPVAEL 123
>UniRef50_Q980A6 Cluster: 30S ribosomal protein S6e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S6e -
Sulfolobus solfataricus
Length = 214
Score = 54.8 bits (126), Expect = 2e-06
Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Frame = +2
Query: 95 VDEHKLRIFYEKRMGAEVEADQL-GDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLM 271
VD++K ++G EA+QL G K L++ GG+D GFPM+ V+ ++ ++L+
Sbjct: 121 VDQNKATNLVGLKIGDVFEANQLIGLPVK---LKITGGSDNSGFPMRFDVIGAAKRKILL 177
Query: 272 SKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVR 385
S G + P +GER+RK++RG + + + +IVR
Sbjct: 178 S-GPPGFYPNENGERRRKTIRGNTISQEIVQINTIIVR 214
>UniRef50_Q6LXY7 Cluster: 30S ribosomal protein S6e; n=4;
Archaea|Rep: 30S ribosomal protein S6e - Methanococcus
maripaludis
Length = 124
Score = 54.8 bits (126), Expect = 2e-06
Identities = 27/94 (28%), Positives = 55/94 (58%)
Frame = +2
Query: 128 KRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRD 307
K++G E+ + E +GY L++ GG+D+ GF M+ + ++R+L+ +G Y +
Sbjct: 28 KKIGDEISGSIV--ELEGYKLKITGGSDRCGFAMRHDIHGAMKMRVLLKEGPG-YNVKEK 84
Query: 308 GERKRKSVRGCIVDANLSVLALVIVRKGAQEIPG 409
G R+RKS+RG + +++++ +V G+ + G
Sbjct: 85 GLRRRKSLRGNTISKDITLINTKVVEYGSAPLGG 118
>UniRef50_A2BJZ7 Cluster: 30S ribosomal protein S6e; n=2;
Desulfurococcales|Rep: 30S ribosomal protein S6e -
Hyperthermus butylicus (strain DSM 5456 / JCM 9403)
Length = 217
Score = 51.6 bits (118), Expect = 2e-05
Identities = 27/68 (39%), Positives = 40/68 (58%)
Frame = +2
Query: 179 GYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANL 358
GY L + GG+D GFPM + + R+L+S G + PR GER+RK+VRG + ++
Sbjct: 146 GYKLLIRGGSDNSGFPMLPSIPGPVKKRVLLS-GPPGFHPREKGERRRKTVRGNTITHDI 204
Query: 359 SVLALVIV 382
+ VIV
Sbjct: 205 VQINTVIV 212
>UniRef50_A7IAP8 Cluster: Ribosomal protein S6e; n=2; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S6e -
Methanoregula boonei (strain 6A8)
Length = 143
Score = 49.6 bits (113), Expect = 8e-05
Identities = 26/69 (37%), Positives = 43/69 (62%)
Frame = +2
Query: 128 KRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRD 307
K++G EV+A LG GY + + GG+D+ G P ++ + R +LL+++G + P +
Sbjct: 32 KKIGDEVDAGPLG--LAGYKILITGGSDQTGTPARKSLPGAGRRKLLLAEGVG-FHPVME 88
Query: 308 GERKRKSVR 334
GERKRK +R
Sbjct: 89 GERKRKMIR 97
>UniRef50_Q9Y9B6 Cluster: 30S ribosomal protein S6e; n=1; Aeropyrum
pernix|Rep: 30S ribosomal protein S6e - Aeropyrum pernix
Length = 235
Score = 48.0 bits (109), Expect = 3e-04
Identities = 23/56 (41%), Positives = 34/56 (60%)
Frame = +2
Query: 179 GYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIV 346
G ++ GG D G PM GV + R ++L++ G + PR GER+RKSVRG ++
Sbjct: 155 GLKFKIRGGTDATGIPMHPGVPGSGRYKVLLA-GPPGFHPRERGERRRKSVRGRMI 209
>UniRef50_Q8ZX25 Cluster: 30S ribosomal protein S6e; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S6e -
Pyrobaculum aerophilum
Length = 148
Score = 47.6 bits (108), Expect = 3e-04
Identities = 39/130 (30%), Positives = 66/130 (50%), Gaps = 4/130 (3%)
Frame = +2
Query: 44 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEW---KGYVLRVAGGNDK 214
KL +S P +G + FE+ D R F ++G E++ L D KG +R+ GG+
Sbjct: 5 KLVLSDPMSGKARQFEIKDPLAQR-FIGLKIGDELDGVILKDLIELPKGAKIRITGGSGI 63
Query: 215 QGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRG-CIVDANLSVLALVIVRKG 391
+G PM GV + + +++ G Y P + G +K+K VRG I D+ + + A+++ K
Sbjct: 64 EGAPMHPGVPGPVK-KYILADGPPGYWPPKKGMKKKKLVRGNTISDSIVQINAVIVYPKD 122
Query: 392 AQEIPGLTDG 421
P + G
Sbjct: 123 YTGPPAIPLG 132
>UniRef50_Q978W7 Cluster: 30S ribosomal protein S6e; n=5;
Thermoplasmatales|Rep: 30S ribosomal protein S6e -
Thermoplasma volcanium
Length = 128
Score = 46.0 bits (104), Expect = 0.001
Identities = 33/117 (28%), Positives = 63/117 (53%)
Frame = +2
Query: 53 VSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMK 232
++ P TG E+ E ++ +++G EV D + + GY +++ GG+ GF M+
Sbjct: 8 IADPKTGKTYKREIPSE-RMSSLIGRKIGEEV--DGVFFDLVGYKMKITGGSSVDGFAMR 64
Query: 233 QGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEI 403
+ T + ++L+ K S YR ++G RKR + RG I+ ++++ + L I + G I
Sbjct: 65 PDLQTQGKKQILV-KYTSGYR-GKNGIRKRITARGSIIGSDITQINLKITQYGPTPI 119
>UniRef50_A0RYX5 Cluster: Ribosomal protein S6E; n=1; Cenarchaeum
symbiosum|Rep: Ribosomal protein S6E - Cenarchaeum
symbiosum
Length = 133
Score = 45.2 bits (102), Expect = 0.002
Identities = 28/68 (41%), Positives = 39/68 (57%)
Frame = +2
Query: 134 MGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGE 313
+G+E +A LG E K +R+ GG+DK G PM+ V +R +L+S+G R G
Sbjct: 39 IGSEADATALGLEGK---IRITGGSDKSGVPMRPDVHGPARKYVLLSRGVG-LRDAERGG 94
Query: 314 RKRKSVRG 337
R RK VRG
Sbjct: 95 RTRKLVRG 102
>UniRef50_Q8PU79 Cluster: 30S ribosomal protein S6e; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S6e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 136
Score = 44.4 bits (100), Expect = 0.003
Identities = 25/78 (32%), Positives = 42/78 (53%)
Frame = +2
Query: 179 GYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANL 358
GY +++ GG D GF MK + R R+L + G Y P+ G+R+RK +RG + ++
Sbjct: 47 GYKVQITGGCDGSGFVMKPDLPGPRRQRILTATGVG-YVPKLPGQRRRKMMRGKEIAPDI 105
Query: 359 SVLALVIVRKGAQEIPGL 412
+ +V G++ I L
Sbjct: 106 VQVNAKVVEYGSKSIKAL 123
>UniRef50_A6C4P7 Cluster: Pseudouridine synthase; n=1; Planctomyces
maris DSM 8797|Rep: Pseudouridine synthase -
Planctomyces maris DSM 8797
Length = 352
Score = 42.7 bits (96), Expect = 0.010
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 1/123 (0%)
Frame = +2
Query: 212 KQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKG 391
++G K+GV S ++ L +G S + E + + +R + V+ LV +R G
Sbjct: 171 RKGVRFKEGVFRVSGLKYLKKQGKSAFLELTLHEGQNREIRRMMARIGHKVIQLVRIRFG 230
Query: 392 AQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKP-RHK 568
+ L G RRL K+R+L N D+R ++GK+NA P + +
Sbjct: 231 PLNLGKLKTGE-SRRLSDTELKKLRQLLNEKHSPDIRH---------RKGKKNAAPAKTR 280
Query: 569 APK 577
AP+
Sbjct: 281 APR 283
>UniRef50_A7DQN0 Cluster: Ribosomal protein S6e; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein S6e
- Candidatus Nitrosopumilus maritimus SCM1
Length = 137
Score = 40.7 bits (91), Expect = 0.039
Identities = 25/75 (33%), Positives = 40/75 (53%)
Frame = +2
Query: 134 MGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGE 313
+G E +A +G K L++ GG+DK G PM+ + +R +L+SKG + G+
Sbjct: 33 LGQETDASVVGLNGK---LKLTGGSDKSGVPMRNDIHGAARKYVLLSKGVG-LQDAEKGQ 88
Query: 314 RKRKSVRGCIVDANL 358
R RK +RG V +
Sbjct: 89 RVRKLMRGNTVSEEI 103
>UniRef50_Q74MJ5 Cluster: 30S ribosomal protein S6e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S6e -
Nanoarchaeum equitans
Length = 126
Score = 39.5 bits (88), Expect = 0.090
Identities = 23/69 (33%), Positives = 40/69 (57%)
Frame = +2
Query: 35 AVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDK 214
+V+K+ VS P +G E + L Y K++G ++ ++G + GY L++ GG+D
Sbjct: 5 SVVKIVVSDPKSGKAIQIETKEPQWL---YGKKIGDTIDGSKIGLD--GYELKITGGSDI 59
Query: 215 QGFPMKQGV 241
GFPM++ V
Sbjct: 60 AGFPMRKEV 68
>UniRef50_Q87BM0 Cluster: Putative uncharacterized protein; n=1;
Xylella fastidiosa Temecula1|Rep: Putative
uncharacterized protein - Xylella fastidiosa (strain
Temecula1 / ATCC 700964)
Length = 109
Score = 35.1 bits (77), Expect = 1.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 178 GLCTSCRWRQRQARIPDETGRPDKQPCSSSDVKG 279
G C RWR ++ + DE G + PC+ DV+G
Sbjct: 17 GACCMARWRCQEINVTDEVGYGMRLPCTPHDVRG 50
>UniRef50_Q6CGN4 Cluster: Similarity; n=4; Eukaryota|Rep: Similarity
- Yarrowia lipolytica (Candida lipolytica)
Length = 1268
Score = 34.3 bits (75), Expect = 3.4
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +2
Query: 674 EYAKLLAQRKKESKVRRQEEIKRRRSASMRD 766
E AKLL +KKE VR EE KR+ A ++D
Sbjct: 708 EEAKLLELKKKEEAVRAAEEAKRKEEAKLKD 738
>UniRef50_Q8TRJ6 Cluster: Glycosyltransferase; n=1; Methanosarcina
acetivorans|Rep: Glycosyltransferase - Methanosarcina
acetivorans
Length = 812
Score = 34.3 bits (75), Expect = 3.4
Identities = 19/101 (18%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Frame = +2
Query: 224 PMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIV-DANLSVLALVIVRKGAQE 400
P K+ ++T++R ++L+ +SCY PR G+ + ++ + + ++++ +++ K Q
Sbjct: 405 PAKKNIITSNREKILVLATYSCYPPRGGGQHRLYNIYSLLAKEFDVTICSIIEANKQYQN 464
Query: 401 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRV 523
+ + D + + P+ R + K+ Y V +
Sbjct: 465 L--VLDNGLKQICIPQSTEHARYQWEAEKKVGANLYDVAMI 503
>UniRef50_A6L045 Cluster: Putative uncharacterized protein; n=1;
Bacteroides vulgatus ATCC 8482|Rep: Putative
uncharacterized protein - Bacteroides vulgatus (strain
ATCC 8482 / DSM 1447 / NCTC 11154)
Length = 541
Score = 33.5 bits (73), Expect = 5.9
Identities = 20/47 (42%), Positives = 28/47 (59%)
Frame = +2
Query: 371 LVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV 511
L+ V +EI LT GNVP+ + R ++RK NLS EDD+ Y+
Sbjct: 494 LLRVNLSTKEISMLT-GNVPKTINMNRY-RLRKSLNLSSEDDLTDYL 538
>UniRef50_O86476 Cluster: Clumping factor B precursor; n=31;
Staphylococcus aureus|Rep: Clumping factor B precursor -
Staphylococcus aureus
Length = 913
Score = 33.5 bits (73), Expect = 5.9
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +2
Query: 44 KLNVSYPAT-GCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 220
KL+ SY A L EV D+ K RI+YE A ++ GD K YV+ V G D G
Sbjct: 441 KLSDSYYADPNDSNLKEVTDQFKNRIYYEHPNVASIK---FGDITKTYVVLVEGHYDNTG 497
Query: 221 FPMKQGVL 244
+K V+
Sbjct: 498 KNLKTQVI 505
>UniRef50_Q6N427 Cluster: Phytoene dehydrogenase-related protein;
n=24; Bacteria|Rep: Phytoene dehydrogenase-related
protein - Rhodopseudomonas palustris
Length = 590
Score = 33.1 bits (72), Expect = 7.8
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = -1
Query: 245 SGRPVSSGILACRCRQ-RHEVHSPSIHRLTDQPL 147
SGRPV+SGILA C Q +++ +P HR + P+
Sbjct: 22 SGRPVTSGILASLCEQWQNQPRTPLSHRSGNLPM 55
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 755,683,525
Number of Sequences: 1657284
Number of extensions: 15325863
Number of successful extensions: 48916
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 46505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48820
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 64204279620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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