Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3p11
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   5.4  
SPBC16H5.15 |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.4  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   7.1  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   9.4  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    25   9.4  
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po...    25   9.4  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/45 (22%), Positives = 26/45 (57%)
 Frame = -3

Query: 167  QLFDEDTIVKMRGDDGQEQEKLIRAGEAXCLALDRERARSCNPNT 33
            Q FD+   + ++ D+ ++ + L  A +    ++DR+ + + NP++
Sbjct: 4305 QAFDDSEFMHVKEDEEEDLQALGNAEKDQIKSIDRDESANQNPDS 4349


>SPBC16H5.15 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 166

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 119 QEQEKLIRAGEAXCLALDRERARSCNPNT 33
           +E+E+L++  E    ALD+ER  S  P T
Sbjct: 81  KEKEQLLKEKELRQKALDKERMVSSKPET 109


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 423 TYWRMSEYFCTYXIFCCIRNI 485
           TYW    Y CT+   CCI  I
Sbjct: 486 TYWVTLSYLCTFT--CCIMTI 504


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/39 (23%), Positives = 20/39 (51%)
 Frame = +1

Query: 331 SSWCTSIKFTYVYTIAIITRRNNSIIAKCILLIGECPSI 447
           ++WC  I+      I  I +  + ++ + +LL+  CP +
Sbjct: 852 NAWCPKIRRIIFDEIHCIGQMEDGLVEEQLLLLAPCPIV 890


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 17/54 (31%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
 Frame = +3

Query: 288 RHARVVKNRNRITHLFMVHIYQVYIRVHYCNNH-*KKQQYNSKMHFTYWRMSEY 446
           RH R  K R R  H    H      R H   +H      Y+SK    Y R  E+
Sbjct: 134 RHRRKEKERTRSNHRHGSHRRHEPYRTHLSRHHRHSTTNYHSKRDDRYERRREH 187


>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 586

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 258 DYYFGRRFNERHARVVKNRNRITHLFMVHIYQ 353
           DY      N+R +R+++ R R+  LF+  + Q
Sbjct: 134 DYLINVTKNQRMSRMLEERKRLLQLFLRRVAQ 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,213,052
Number of Sequences: 5004
Number of extensions: 42240
Number of successful extensions: 109
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)