Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3p11
         (535 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0087 + 12163706-12163757,12164877-12164961,12165039-121651...    28   4.1  
08_02_1453 - 27199228-27200579,27200712-27202646,27202905-272029...    27   7.2  
07_01_0836 - 6795224-6795263,6796027-6796128,6796264-6796401,679...    27   9.5  
03_06_0505 - 34397054-34397087,34397127-34397474,34397650-343977...    27   9.5  

>08_02_0087 +
           12163706-12163757,12164877-12164961,12165039-12165107,
           12165757-12165869,12167570-12167681,12167784-12167927,
           12169222-12169396,12169482-12169595,12169734-12169775,
           12171093-12171193,12171515-12171623
          Length = 371

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 203 RCVWSTASKFCDIRVYCL 256
           RC WSTAS+ CD+ V  L
Sbjct: 337 RCSWSTASRGCDVVVSAL 354


>08_02_1453 -
           27199228-27200579,27200712-27202646,27202905-27202966,
           27203525-27203545,27204305-27204344,27204345-27204792,
           27204866-27204964,27205071-27205394,27205446-27205574,
           27205657-27205875,27205976-27206194,27206436-27206669,
           27206773-27206943,27207466-27207577,27207955-27208010,
           27208083-27208181,27208901-27209134,27209258-27209311,
           27209363-27209422
          Length = 1955

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = -2

Query: 303 QHGRAAH*TAVRNNNRRQYTRMSQNFDAVLHTQRLQSVPRRISQLPVV*RRYNSQDA 133
           Q  RA H TA  +  ++Q  R         H Q+LQ V   +++  V   +  +QD+
Sbjct: 453 QATRAEHLTATAHGKQQQQQRFPSVVSESTHEQKLQVVESNVTEHLVYNEQQKAQDS 509


>07_01_0836 -
           6795224-6795263,6796027-6796128,6796264-6796401,
           6796790-6796932,6797388-6797607,6798087-6798208,
           6798317-6798544,6798993-6799355
          Length = 451

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = +3

Query: 213 GARRQSFVTFVCIAFDYYFGRRFNERHARVVKNRNRITHLFMVHIYQVYIRVHYC 377
           GA+++       I  D + G+R  E +   V  R+       + I++ Y R+H C
Sbjct: 301 GAQQKLIECEQVILNDPFLGKRIEEGNFVTVPLRDEFLENARLFIFETYCRIHRC 355


>03_06_0505 -
           34397054-34397087,34397127-34397474,34397650-34397757,
           34397847-34398161,34399027-34399442,34399531-34400946
          Length = 878

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = +1

Query: 334 SWCTSIKFTYVYTIAIITRRNNSIIAKCILLIGECPS 444
           SWC   +  +   I ++ R+  +++ KC+ +  + PS
Sbjct: 128 SWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFHDLPS 164


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,046,256
Number of Sequences: 37544
Number of extensions: 269569
Number of successful extensions: 626
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)