Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3p11
         (535 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67755-6|CAA91759.1|  311|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched famil...    27   6.4  
AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched famil...    27   6.4  
U40423-3|AAA81452.1|  327|Caenorhabditis elegans Hypothetical pr...    27   8.5  
AF036694-4|AAB88342.1|  234|Caenorhabditis elegans Hypothetical ...    27   8.5  

>Z67755-6|CAA91759.1|  311|Caenorhabditis elegans Hypothetical
           protein F54F7.6 protein.
          Length = 311

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +1

Query: 346 SIKFTYVYTIAIITRRNNSIIAKCILLIGECPSIFVRTXYFVV 474
           ++ FT + T  ++ R  N++  +CI+ + E P  F  +  FVV
Sbjct: 48  TVVFTQLNTTNVVERLGNNLF-RCIVKVNELPRNFQHSHNFVV 89


>AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched family
           protein 3, isoform b protein.
          Length = 1361

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
 Frame = +3

Query: 63  SIQSQAXGFSRSNKLLLFLAVIATHLDYCIFVKQLAVG*SFAAQ--IAIAVCGARRQSFV 236
           SI      FS+ N +++ +  I   + Y  F +    G   A Q  +A+A+CG    +  
Sbjct: 606 SIADMLEEFSQFNYIIIVIGYILMVI-YAAFTQGRFQGWWLAVQSNVALAICGVILVTIS 664

Query: 237 TFVCIAFDYYFGRRFNERHARVV 305
           +   + F  + G  FN    +VV
Sbjct: 665 SICGLGFATHLGINFNAATTQVV 687


>AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched family
           protein 3, isoform a protein.
          Length = 1358

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
 Frame = +3

Query: 63  SIQSQAXGFSRSNKLLLFLAVIATHLDYCIFVKQLAVG*SFAAQ--IAIAVCGARRQSFV 236
           SI      FS+ N +++ +  I   + Y  F +    G   A Q  +A+A+CG    +  
Sbjct: 606 SIADMLEEFSQFNYIIIVIGYILMVI-YAAFTQGRFQGWWLAVQSNVALAICGVILVTIS 664

Query: 237 TFVCIAFDYYFGRRFNERHARVV 305
           +   + F  + G  FN    +VV
Sbjct: 665 SICGLGFATHLGINFNAATTQVV 687


>U40423-3|AAA81452.1|  327|Caenorhabditis elegans Hypothetical
           protein C24H10.2 protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 273 RRFNERHARVVKNRNRITHLF 335
           RRFN   ARV K+RN+ + +F
Sbjct: 46  RRFNSNQARVEKDRNQASMIF 66


>AF036694-4|AAB88342.1|  234|Caenorhabditis elegans Hypothetical
           protein CD4.4 protein.
          Length = 234

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 14/70 (20%), Positives = 30/70 (42%)
 Frame = -3

Query: 221 PCSTHSDCNLCREGLANCQLFDEDTIVKMRGDDGQEQEKLIRAGEAXCLALDRERARSCN 42
           P  +H D  +     AN +    + ++ +  DD   +  ++   +   +  D+E A + N
Sbjct: 6   PYESHVDVAVSAAS-ANLRNMTNEQLISLLDDDALLESIIVNLPQVRSMPTDKESALAAN 64

Query: 41  PNTGVWLLAE 12
            +   W LA+
Sbjct: 65  KSLAEWNLAQ 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,476,973
Number of Sequences: 27780
Number of extensions: 251136
Number of successful extensions: 620
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)