Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3p02
         (704 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0292 + 22075647-22075691,22077394-22077507,22077602-220778...    29   3.6  
09_02_0085 + 4111333-4111492,4114766-4116044,4116113-4116206,411...    28   6.3  
05_06_0046 - 25157093-25157431,25157810-25157928,25158024-251581...    28   6.3  
02_05_1197 - 34908382-34908582,34908664-34908837,34909239-349093...    28   6.3  

>09_06_0292 +
           22075647-22075691,22077394-22077507,22077602-22077841,
           22077926-22078003,22078094-22078162,22078420-22078545,
           22079108-22079188,22079272-22079460,22079597-22080434,
           22082290-22082411,22082482-22082701,22082910-22083055,
           22083260-22083566,22083886-22084136,22084294-22084533,
           22084930-22085238
          Length = 1124

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = -3

Query: 210 CCICTGV--KLKSQSVGASTCNVGFELSCTVSVEVCSSIVLVTFCFTLRNNAISN 52
           C +C     K          C  GF+  C +++E    I ++  CF +  NA+SN
Sbjct: 153 CTLCNAEVRKFSKHCRSCDKCVDGFDHHCRLAIEFGVGIAVIVLCF-VDKNALSN 206


>09_02_0085 +
           4111333-4111492,4114766-4116044,4116113-4116206,
           4116297-4116545
          Length = 593

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 530 YSEHPHSSEWQLGNLWW 580
           Y  +PHS+ W +GNL W
Sbjct: 66  YQYNPHSALWDIGNLSW 82


>05_06_0046 -
           25157093-25157431,25157810-25157928,25158024-25158189,
           25158289-25158415,25158490-25158590,25158719-25158905,
           25159000-25159100,25159220-25160194,25160325-25160423,
           25160500-25160972,25161307-25161420,25161830-25161900,
           25162015-25162086,25162334-25162377
          Length = 995

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 80  KQKVTSTMDEHTSTDTVQESSNPTLHVEAPTDCDFNLTP 196
           K+KVTS M+++T+ D    +S PT      T+    + P
Sbjct: 122 KRKVTSEMEKNTAKDATASASQPTTKPSFSTNKRIQVKP 160


>02_05_1197 -
           34908382-34908582,34908664-34908837,34909239-34909337,
           34909444-34909644,34910229-34910336,34910498-34910882,
           34911132-34911584,34911868-34912094,34912211-34912270
          Length = 635

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 161 EAPTDCDFNLTPVQIQQQYFENLGDC-NWI 247
           +A  DC ++ TP  +  + FENL  C NW+
Sbjct: 543 KARNDCVYHCTPALLVPESFENLHVCENWL 572


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,217,733
Number of Sequences: 37544
Number of extensions: 299462
Number of successful extensions: 576
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)