Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3p02
         (704 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98269-1|CAB10975.1| 1589|Drosophila melanogaster EG:87B1.5,FBgn...    31   2.0  
X63672-1|CAA45211.1| 1589|Drosophila melanogaster polyhomeotic p...    31   2.0  
AE014298-338|AAF45727.3| 1589|Drosophila melanogaster CG18412-PA...    31   2.0  

>Z98269-1|CAB10975.1| 1589|Drosophila melanogaster
           EG:87B1.5,FBgn0004861;ph-p protein.
          Length = 1589

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 95  STMDEHTSTDTVQESSNPTLHVEAPTDCDFNLTPVQIQQQYFEN 226
           +++  HTS  T++++ NP   V A T     ++P Q+QQ Y  N
Sbjct: 173 NSIARHTSL-TLEKAQNPGQQVAATTTVPLQISPEQLQQFYASN 215


>X63672-1|CAA45211.1| 1589|Drosophila melanogaster polyhomeotic
           protein.
          Length = 1589

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 95  STMDEHTSTDTVQESSNPTLHVEAPTDCDFNLTPVQIQQQYFEN 226
           +++  HTS  T++++ NP   V A T     ++P Q+QQ Y  N
Sbjct: 173 NSIARHTSL-TLEKAQNPGQQVAATTTVPLQISPEQLQQFYASN 215


>AE014298-338|AAF45727.3| 1589|Drosophila melanogaster CG18412-PA
           protein.
          Length = 1589

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 95  STMDEHTSTDTVQESSNPTLHVEAPTDCDFNLTPVQIQQQYFEN 226
           +++  HTS  T++++ NP   V A T     ++P Q+QQ Y  N
Sbjct: 173 NSIARHTSL-TLEKAQNPGQQVAATTTVPLQISPEQLQQFYASN 215


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,607,457
Number of Sequences: 53049
Number of extensions: 567705
Number of successful extensions: 1322
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1322
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3108380451
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)