Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3p02
(704 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical ... 32 0.46
Z79639-3|CAB01918.1| 385|Caenorhabditis elegans Hypothetical pr... 31 0.61
Z68299-2|CAA92611.2| 344|Caenorhabditis elegans Hypothetical pr... 30 1.4
AF099913-11|AAM22044.1| 286|Caenorhabditis elegans Hypothetical... 30 1.9
AF099913-10|AAK93839.1| 303|Caenorhabditis elegans Hypothetical... 30 1.9
Z79759-8|CAE45097.1| 619|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z68301-1|CAA92624.1| 360|Caenorhabditis elegans Hypothetical pr... 29 3.2
X72943-1|CAA51448.1| 360|Caenorhabditis elegans Wnt-2 protein p... 29 3.2
AF078157-3|AAG24079.1| 119|Caenorhabditis elegans Hypothetical ... 28 7.5
Z79603-10|CAI79233.1| 224|Caenorhabditis elegans Hypothetical p... 27 9.9
>AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical
protein Y80D3A.8 protein.
Length = 1293
Score = 31.9 bits (69), Expect = 0.46
Identities = 13/43 (30%), Positives = 29/43 (67%)
Frame = +2
Query: 35 YTNIYLLLIALFLKVKQKVTSTMDEHTSTDTVQESSNPTLHVE 163
+ + ++L+ +F K+ ++T+D +TD+V+ES+ PT ++E
Sbjct: 22 FQSFAIVLLLMFCKLHAFNSTTLDPPDTTDSVKESTKPTDYLE 64
>Z79639-3|CAB01918.1| 385|Caenorhabditis elegans Hypothetical
protein F54E4.4 protein.
Length = 385
Score = 31.5 bits (68), Expect = 0.61
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +2
Query: 89 VTSTMDEHTS--TDTVQESSNPTLHVEAPTDCDFNLTPVQIQQ 211
+TST+ T+ T TV ++NP H T+ DF +TPV ++Q
Sbjct: 148 ITSTVSATTTVTTQTVTSTTNPP-HPTLVTEDDFTVTPVSVRQ 189
>Z68299-2|CAA92611.2| 344|Caenorhabditis elegans Hypothetical
protein T04B2.4 protein.
Length = 344
Score = 30.3 bits (65), Expect = 1.4
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Frame = -2
Query: 397 NFFFLSGSVSLKINCI-----HFFLFYQLPFSNRRT------K*SKCQVLQ*MISIALFI 251
N FF+ G V L +NC+ + +LF L N++T SK + L M LF
Sbjct: 201 NIFFVIGGVFLFVNCLFLVLTYCYLFIVLHERNKKTPPRPTRHISKRKELARMREAKLFT 260
Query: 250 SNPVTIP*VFKILLLYLYRG 191
+ +T+ +LLL+++ G
Sbjct: 261 MSTITVCVQMSVLLLFIFGG 280
>AF099913-11|AAM22044.1| 286|Caenorhabditis elegans Hypothetical
protein C29F9.3c protein.
Length = 286
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 65 LFLKVKQKVTSTMDEHTSTDTVQESSNPTLHVEAPTDC 178
LF KVK K+ +D+ STD++ HV+ +DC
Sbjct: 6 LFSKVKLKINQFIDDLKSTDSLWNEVRFDAHVDKISDC 43
>AF099913-10|AAK93839.1| 303|Caenorhabditis elegans Hypothetical
protein C29F9.3a protein.
Length = 303
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 65 LFLKVKQKVTSTMDEHTSTDTVQESSNPTLHVEAPTDC 178
LF KVK K+ +D+ STD++ HV+ +DC
Sbjct: 6 LFSKVKLKINQFIDDLKSTDSLWNEVRFDAHVDKISDC 43
>Z79759-8|CAE45097.1| 619|Caenorhabditis elegans Hypothetical
protein ZK858.6 protein.
Length = 619
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = -2
Query: 481 FYYHLH*KIFSGMIISITLFTYFCID*VNFFFLSGSVSLKINCIHFFL 338
FYY+ I G + ++ F+Y + + FFF++G++ + HFFL
Sbjct: 565 FYYNTKLTI-EGFVPTVLYFSYSSLIALTFFFMTGTIGFYAS--HFFL 609
>Z68301-1|CAA92624.1| 360|Caenorhabditis elegans Hypothetical
protein W01B6.1 protein.
Length = 360
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -3
Query: 207 CICTGVKLKSQSVGASTCNVGFELSCTVSVEVCSSIVLVTFC 82
C G +Q V S CN FE C V + C+++ V C
Sbjct: 319 CCGRGYNTYTQEV-KSKCNCKFEWCCKVVCQTCNNVTQVDIC 359
>X72943-1|CAA51448.1| 360|Caenorhabditis elegans Wnt-2 protein
protein.
Length = 360
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -3
Query: 207 CICTGVKLKSQSVGASTCNVGFELSCTVSVEVCSSIVLVTFC 82
C G +Q V A CN FE C V + C+++ V C
Sbjct: 319 CCGRGYNTYTQEVKAK-CNCKFEWCCKVVCQTCNNVTQVDIC 359
>AF078157-3|AAG24079.1| 119|Caenorhabditis elegans Hypothetical
protein F25E5.9 protein.
Length = 119
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 252 YLIQLQSPKFSKYCCCICTGVKLKSQSVGASTC 154
Y ++L S F + C IC G K S S+ C
Sbjct: 41 YFLRLPSSSFCRDLCAICGGAKPTSLSIEECMC 73
>Z79603-10|CAI79233.1| 224|Caenorhabditis elegans Hypothetical
protein M163.11 protein.
Length = 224
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = -3
Query: 222 SKYCCCICTGVKLKSQSVGASTCNVGFELSCTVSVEVCSSIVLVTFC 82
++YC C+ S S +S+ SCT S CSS FC
Sbjct: 158 TQYCAATCSLCSSSSDS-SSSSSTASTSSSCTDSASSCSSWAANGFC 203
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,238,282
Number of Sequences: 27780
Number of extensions: 314221
Number of successful extensions: 710
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -