Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3p02
         (704 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    24   1.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.7  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   4.9  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   4.9  

>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +2

Query: 38  TNIYLLLIALFLKVKQKVTSTMDEHTSTDTVQESSNPTLHVEAPTDCDF 184
           TN  LL++ L +   Q VTS + +  S+  ++ S N  +H     D DF
Sbjct: 2   TNWLLLIVCLSIAC-QDVTSAIHQRKSSKNLEHSMN-VIHEWKYIDYDF 48


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 1   EFPDKQRQLSVIYKYILIAYC 63
           E PDKQ  L+ IY +    +C
Sbjct: 519 ESPDKQLTLNEIYNWFQNTFC 539


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 102 WMNTPQRTQCKKAQIQHYMLKHQQIVT 182
           WM++ Q    K+ + Q Y   H+Q++T
Sbjct: 244 WMSSSQYHMPKEIRGQLYYFLHKQLMT 270


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 102 WMNTPQRTQCKKAQIQHYMLKHQQIVT 182
           WM++ Q    K+ + Q Y   H+Q++T
Sbjct: 244 WMSSSQYHMPKEIRGQLYYFLHKQLMT 270


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,731
Number of Sequences: 438
Number of extensions: 3736
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)