Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3o24
         (747 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0110 - 17357323-17357403,17357487-17357595,17357737-173579...    33   0.32 
01_05_0048 - 17561963-17563585                                         29   5.2  
08_02_0621 - 19397038-19397076,19397305-19397593,19397676-193978...    28   9.1  
06_03_0784 - 24557089-24557198,24557296-24560725                       28   9.1  

>03_04_0110 -
           17357323-17357403,17357487-17357595,17357737-17357906,
           17358503-17358649,17358767-17358925,17359410-17359469,
           17359659-17359705,17359786-17359888,17362640-17363080
          Length = 438

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = -1

Query: 330 VAVINMDHGNFMIEKEISYSINFSQDLLYKILNSYI---VPNYSLAQQYFDLYDENGFRT 160
           + V+N  H  F+ E  ++Y +++ +  +Y  ++  I      +SL Q Y DL+D+     
Sbjct: 216 IEVVNRLHKEFVHETLLNYGVHYDKTWIYDKIHHEINQFCSAHSLQQVYIDLFDQIDETM 275

Query: 159 RIPIQSACNNIISSVK 112
           +  IQ  C      ++
Sbjct: 276 KEAIQRDCTRYAPGIE 291


>01_05_0048 - 17561963-17563585
          Length = 540

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = -1

Query: 204 AQQYFDLYDENGFRTRIPIQSACNNIISSVKKTNSKHKKFVYWPKDTXRVGAVGVETRAK 25
           A +YF L  E+GF   +P    CN +I +  +    H  F     D  R   +G  TR  
Sbjct: 348 ALKYFQLSKESGFPMEVP---TCNAVIGAYCRALEFHHAFKM--VDEMRKSGIGPNTRTY 402

Query: 24  NI 19
           +I
Sbjct: 403 DI 404


>08_02_0621 -
           19397038-19397076,19397305-19397593,19397676-19397824,
           19399030-19399839,19399926-19400105,19400450-19400674,
           19400750-19401157
          Length = 699

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = -1

Query: 117 VKKTNSKHKKFVYWPKDTXRVGAVGVETRAKNINPP 10
           V    + H  F+ WPKD   +  +   T A    PP
Sbjct: 338 VLSLGNAHGTFIQWPKDLIEIRVIARSTTAPGGRPP 373


>06_03_0784 - 24557089-24557198,24557296-24560725
          Length = 1179

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = +1

Query: 415 ACITYKSPCSPDAYHDDGWFICNSHLIKRFKMSKMVLPIFDE--DDNQFKMTIARHLVGN 588
           A + Y      D Y    W IC SH+  + +++K +L   D+  D   F  ++ +  + N
Sbjct: 228 AQLIYNDKRIEDNYDLRAW-ICVSHVFDKVRITKEILTSIDKTIDLTNFNFSMLQEELKN 286

Query: 589 KERGIKRILIPSATNYQE 642
           K +  K +L+     Y E
Sbjct: 287 KVKMKKFLLVLDDVWYDE 304


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,622,106
Number of Sequences: 37544
Number of extensions: 357366
Number of successful extensions: 849
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)