Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3o24
         (747 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81523-4|CAB04243.1|  824|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AY340594-1|AAQ17186.1|  824|Caenorhabditis elegans SPD-2 protein.      29   3.5  
Z82260-3|CAB05131.1|  346|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z70210-8|CAA94154.2|  414|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AY204169-1|AAO39173.1|  414|Caenorhabditis elegans nuclear recep...    29   4.6  
AL031630-12|CAA20991.1|  375|Caenorhabditis elegans Hypothetical...    28   6.1  
Z81516-7|CAB04207.1| 1377|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z81467-6|CAB03874.1| 1377|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>Z81523-4|CAB04243.1|  824|Caenorhabditis elegans Hypothetical
           protein F32H2.3 protein.
          Length = 824

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = -1

Query: 195 YFDLYDENGFRTRIPIQSACNNIISSVKKTNSKHKKF---VYWPKDTXRVGAVGVETR 31
           Y DL+DEN FRT   + +A  +  SS ++      KF   V W ++T R     +E R
Sbjct: 664 YIDLHDENNFRTSSSLSTA--STTSSFQRRILPGAKFFVHVVWGEETMRTRLRLLEVR 719


>AY340594-1|AAQ17186.1|  824|Caenorhabditis elegans SPD-2 protein.
          Length = 824

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = -1

Query: 195 YFDLYDENGFRTRIPIQSACNNIISSVKKTNSKHKKF---VYWPKDTXRVGAVGVETR 31
           Y DL+DEN FRT   + +A  +  SS ++      KF   V W ++T R     +E R
Sbjct: 664 YIDLHDENNFRTSSSLSTA--STTSSFQRRILPGAKFFVHVVWGEETMRTRLRLLEVR 719


>Z82260-3|CAB05131.1|  346|Caenorhabditis elegans Hypothetical
           protein C32H11.4 protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 349 VGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAYH 459
           +GM P  + + + +FA+  S D    + SP  P+ Y+
Sbjct: 146 IGMQPHVLNITQDLFAADFSSDKVALFVSPADPNDYY 182


>Z70210-8|CAA94154.2|  414|Caenorhabditis elegans Hypothetical
           protein K08H2.8 protein.
          Length = 414

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = -1

Query: 279 SYSINFSQDLLYKILNSYIVPNYSLAQQYFDLYDENGFRTRI---PIQSACNNIISSVKK 109
           +Y + F +D L  + N+YIVP   +  +  D+ DEN  R  +   P+++  N ++  +  
Sbjct: 253 TYELGF-RDRLVLVNNNYIVPGVPINFKGSDVVDENQMRDIMFGEPMRALINELVLPIGS 311

Query: 108 TN 103
            N
Sbjct: 312 QN 313


>AY204169-1|AAO39173.1|  414|Caenorhabditis elegans nuclear receptor
           NHR-32 protein.
          Length = 414

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = -1

Query: 279 SYSINFSQDLLYKILNSYIVPNYSLAQQYFDLYDENGFRTRI---PIQSACNNIISSVKK 109
           +Y + F +D L  + N+YIVP   +  +  D+ DEN  R  +   P+++  N ++  +  
Sbjct: 253 TYELGF-RDRLVLVNNNYIVPGVPINFKGSDVVDENQMRDIMFGEPMRALINELVLPIGS 311

Query: 108 TN 103
            N
Sbjct: 312 QN 313


>AL031630-12|CAA20991.1|  375|Caenorhabditis elegans Hypothetical
           protein Y38H6C.13 protein.
          Length = 375

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 144 SACNNIISSVKKTNSKHKKFVYWPK 70
           SAC+N    ++  N+  + F YWP+
Sbjct: 29  SACSNFFQFIRLNNNVMESFEYWPR 53


>Z81516-7|CAB04207.1| 1377|Caenorhabditis elegans Hypothetical protein
            F26H9.8 protein.
          Length = 1377

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
 Frame = -1

Query: 267  NFSQDLLYKILNSYIVPNYSLAQQYF--DLYDENGFRTRIPIQSACNNIISSVKKTNSKH 94
            N  QDL   +L+   VP  SL Q++   + + ++G + +      CNN ++   K NS  
Sbjct: 1286 NLDQDLPNNMLHE--VPIKSLPQEWLWCETWCDDGSKEKAKTIDLCNNPLTKEPKLNSAK 1343

Query: 93   KKFVYWPKDTXRVGAVGVETRAKNINPP 10
            +    W +    +  V     + +IN P
Sbjct: 1344 RIIKEWTEYDSEISKV---LNSADINTP 1368


>Z81467-6|CAB03874.1| 1377|Caenorhabditis elegans Hypothetical protein
            F26H9.8 protein.
          Length = 1377

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
 Frame = -1

Query: 267  NFSQDLLYKILNSYIVPNYSLAQQYF--DLYDENGFRTRIPIQSACNNIISSVKKTNSKH 94
            N  QDL   +L+   VP  SL Q++   + + ++G + +      CNN ++   K NS  
Sbjct: 1286 NLDQDLPNNMLHE--VPIKSLPQEWLWCETWCDDGSKEKAKTIDLCNNPLTKEPKLNSAK 1343

Query: 93   KKFVYWPKDTXRVGAVGVETRAKNINPP 10
            +    W +    +  V     + +IN P
Sbjct: 1344 RIIKEWTEYDSEISKV---LNSADINTP 1368


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,535,174
Number of Sequences: 27780
Number of extensions: 336962
Number of successful extensions: 826
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)