Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3o22
         (606 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   2.6  
AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    22   4.6  
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    22   4.6  
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    22   4.6  
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    22   4.6  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 9/47 (19%)
 Frame = -2

Query: 548 YILHTVKLLLIGN*SYFFFIRL---------SNNFVSLICVFWRFFC 435
           +IL TV LLL+    YF+++ L         + + + L+C+++ F+C
Sbjct: 245 FILFTVHLLLLVCIYYFYYMHLLFCCAFIIFTMHLLFLLCIYY-FYC 290


>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -2

Query: 557 FLFYILHTVKLLLIGN*SYFFFIRLSNN 474
           ++FY++ TV ++L+G   +   +  S N
Sbjct: 92  YVFYVVTTVLVVLVGYERFDILLNKSKN 119


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -2

Query: 602 FXRQYVYYEFHNTITFL--FYILHTVKLLL 519
           F + Y+  +F N +TF    +I+  +KL+L
Sbjct: 37  FVKTYLVSDFENYVTFFCSLFIVVILKLIL 66


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -2

Query: 557 FLFYILHTVKLLLIGN*SYFFFIRLSNN 474
           ++FY++ TV ++L+G   +   +  S N
Sbjct: 92  YVFYVVTTVLVVLVGYERFDILLNKSKN 119


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -2

Query: 557 FLFYILHTVKLLLIGN*SYFFFIRLSNN 474
           ++FY++ TV ++L+G   +   +  S N
Sbjct: 92  YVFYVVTTVLVVLVGYERFDILLNKSKN 119


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,390
Number of Sequences: 336
Number of extensions: 1936
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15352827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)