Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3o17
(621 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1304 - 25629822-25629839,25630091-25631148,25631784-256349... 38 0.008
07_03_1576 - 27862043-27862129,27862935-27862988,27863042-278632... 29 2.3
03_04_0161 + 17838466-17838551,17842379-17842445,17842537-178426... 29 2.3
11_04_0440 - 17772550-17772567,17772644-17772766,17772954-177732... 29 3.0
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336... 29 3.0
07_03_1528 + 27474973-27475289,27476890-27477073,27477081-274772... 28 5.2
07_03_1511 + 27276736-27276998,27277090-27277267,27277740-272784... 28 6.9
03_02_0799 - 11330254-11330319,11330359-11330505 28 6.9
>07_03_1304 - 25629822-25629839,25630091-25631148,25631784-25634928,
25635454-25636293
Length = 1686
Score = 37.5 bits (83), Expect = 0.008
Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 8/123 (6%)
Frame = +2
Query: 257 CIKEIEGAYGVRDRGNVIVFYPYLKQLRDALKLIKNSFACCFKNINSMQMYVNELISNCL 436
C+ E+E + + G+V + Q ALK CC KN Q+ V +L S L
Sbjct: 1527 CLCEVEDPFKLESCGHVFCLTCLVDQCESALKSHDGFPLCCLKNGCKKQLLVVDLRS--L 1584
Query: 437 LFIEKLETINKTVKVMNLFVDNSVLY------ECNVCKEISTDERFLKPKEC--CEYAIC 592
L EKLE + + + N+ Y +C +++ + KP C C IC
Sbjct: 1585 LSSEKLEELFR-ASLRAFVASNAGKYRFCPTPDCPSIYQVAAADAESKPFVCGACFVEIC 1643
Query: 593 NAC 601
N C
Sbjct: 1644 NKC 1646
>07_03_1576 -
27862043-27862129,27862935-27862988,27863042-27863243,
27865015-27865249,27865338-27865404,27865489-27865639,
27866898-27866957,27867402-27867466
Length = 306
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/84 (22%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = +2
Query: 356 IKNSFACCFKNINSMQMYVNELISNC--LLFIEKLETINKTVKVMNLFVDNSVLYECNVC 529
I+ +A F ++ + +NE+ + IE+ ++ K++ +D+++ EC +C
Sbjct: 110 IREFYAVIFPSLMQLHEGINEVEDKKQKAICIERYRRRDEDQKMVISEIDDNIEEECGIC 169
Query: 530 KEISTDERFLKPKECCEYAICNAC 601
EI + + + P C +A+C C
Sbjct: 170 MEI--NGKVVLP--TCSHAMCIKC 189
>03_04_0161 +
17838466-17838551,17842379-17842445,17842537-17842662,
17842756-17842886,17843121-17843220,17843334-17843466,
17843500-17843544,17843545-17843608,17843692-17844469,
17844897-17845229,17845427-17845634,17845733-17845809,
17846168-17846240,17846343-17846413,17846597-17846716,
17846815-17846879,17846974-17847124
Length = 875
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/65 (29%), Positives = 25/65 (38%)
Frame = +2
Query: 425 SNCLLFIEKLETINKTVKVMNLFVDNSVLYECNVCKEISTDERFLKPKECCEYAICNACC 604
SNCL VK+ D C+ CK D F + + C Y +C ACC
Sbjct: 220 SNCLFTFLFAGVSMDEVKLEQADCDMDERVYCDRCKTSIVD--FHRSCKACSYDLCLACC 277
Query: 605 VTMXK 619
+ K
Sbjct: 278 WELRK 282
>11_04_0440 -
17772550-17772567,17772644-17772766,17772954-17773239,
17773320-17773455,17773787-17773998,17775213-17775574,
17775670-17775700,17775807-17775868
Length = 409
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/70 (27%), Positives = 38/70 (54%)
Frame = +2
Query: 308 IVFYPYLKQLRDALKLIKNSFACCFKNINSMQMYVNELISNCLLFIEKLETINKTVKVMN 487
+V+ P L + ++L+++ + C KN N + N+ FI+KLE +NK+ + +
Sbjct: 272 LVWEPGLWESSTKVQLVRDVYWCYNKNKNRISTLKNKTALGLKSFIDKLE-VNKS-RAPD 329
Query: 488 LFVDNSVLYE 517
+++ LYE
Sbjct: 330 KQINDDNLYE 339
>02_01_0471 -
3364215-3364912,3365511-3365742,3365827-3366198,
3366324-3366449,3367056-3367262,3367399-3367492,
3367575-3367621,3367705-3368157,3368261-3368560,
3368656-3369114,3369189-3369410,3369659-3369890,
3370051-3370422,3371210-3371322,3371682-3371903,
3371977-3372180,3372308-3372572,3373123-3373311,
3373441-3373768,3373843-3374248,3374339-3374648,
3375677-3375837,3376825-3376998,3377265-3377609,
3377713-3377754,3378585-3378734,3378847-3379002,
3379088-3379540,3379651-3379966,3380402-3380839,
3381475-3381697,3383538-3383852,3384033-3384095,
3384699-3384903,3385362-3385425,3386014-3386204
Length = 3048
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Frame = -1
Query: 615 HMVTQHALHIAYSQHSFG---FKNLSSVDISLQTLHSYKTELSTNKFITLTVLLIVSSF- 448
H +T HAL SQH+ F+++ +++ L L ++LS +K+ + + SF
Sbjct: 300 HFITLHALRSTISQHARAQNHFRSIGGLEVLLDGLGLPSSKLSVSKY---SFVPSDESFG 356
Query: 447 SINNRQF 427
++NN QF
Sbjct: 357 NVNNLQF 363
>07_03_1528 +
27474973-27475289,27476890-27477073,27477081-27477261,
27477270-27478206,27478384-27479035,27479352-27479798
Length = 905
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +2
Query: 395 SMQMYVNELISNCLLFIEKLETINKTVKVMNLFVDNSVLY 514
++ M +E + NCL+ ++ E INK ++ + DN +Y
Sbjct: 687 ALAMLASENVDNCLVMSKEPEFINKLRNMILIHDDNKYIY 726
>07_03_1511 +
27276736-27276998,27277090-27277267,27277740-27278436,
27278674-27278756,27278790-27279293,27279504-27279920
Length = 713
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 395 SMQMYVNELISNCLLFIEKLETINKTVKVMNLFVDNSVLY 514
++ M +E + NCL+ +++ E INK +K M L D +Y
Sbjct: 504 ALAMLASENVHNCLVMLKEPEFINK-LKNMILIHDGKCIY 542
>03_02_0799 - 11330254-11330319,11330359-11330505
Length = 70
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +2
Query: 521 NVCKEISTDERFLKPKECCEYAICNAC 601
N +E+++D F+ P C++ C AC
Sbjct: 28 NAGREVNSDILFVVPDHDCDFVYCRAC 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,087,458
Number of Sequences: 37544
Number of extensions: 291021
Number of successful extensions: 899
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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