Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3o17
         (621 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC031094-1|AAH31094.1|  633|Homo sapiens zinc finger, SWIM-type ...    33   1.1  
AC103914-1|AAX82016.1|  538|Homo sapiens unknown protein.              33   1.1  
U67615-1|AAB41309.1| 3801|Homo sapiens beige protein homolog pro...    31   3.3  
AL390765-1|CAI14952.1| 3801|Homo sapiens lysosomal trafficking r...    31   3.3  
AL121997-1|CAI18987.1| 3801|Homo sapiens lysosomal trafficking r...    31   3.3  
BC043409-1|AAH43409.1|  422|Homo sapiens KCNH5 protein protein.        31   4.3  

>BC031094-1|AAH31094.1|  633|Homo sapiens zinc finger, SWIM-type
           containing 2 protein.
          Length = 633

 Score = 32.7 bits (71), Expect = 1.1
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +2

Query: 437 LFIEKLETINKTVKVMNLF-VDNSVLYECNVCKEISTDERFLKPKECCEYAICNAC 601
           L +E+ +  +K V       +D  +   CN CK+   + +  K  EC EY +C  C
Sbjct: 206 LILEEFKNSSKLVAAAEKERLDKHLGIPCNNCKQFPIEGKCYKCTECIEYHLCQEC 261


>AC103914-1|AAX82016.1|  538|Homo sapiens unknown protein.
          Length = 538

 Score = 32.7 bits (71), Expect = 1.1
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +2

Query: 437 LFIEKLETINKTVKVMNLF-VDNSVLYECNVCKEISTDERFLKPKECCEYAICNAC 601
           L +E+ +  +K V       +D  +   CN CK+   + +  K  EC EY +C  C
Sbjct: 111 LILEEFKNSSKLVAAAEKERLDKHLGIPCNNCKQFPIEGKCYKCTECIEYHLCQEC 166


>U67615-1|AAB41309.1| 3801|Homo sapiens beige protein homolog protein.
          Length = 3801

 Score = 31.1 bits (67), Expect = 3.3
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +2

Query: 404  MYVNELISNCLLFIEKLETINKTVKVMNLFVDNSVLYE-CNVCKEISTDERFLKPKE 571
            +Y N L+ N LL +  L+ +N   KV ++ +DN +LY  CN    ++  E+ +   E
Sbjct: 2438 LYDNILLHNALLLL--LQILNSCSKVADMLLDNGLLYVLCNTVAALNGLEKNIPMSE 2492


>AL390765-1|CAI14952.1| 3801|Homo sapiens lysosomal trafficking
            regulator protein.
          Length = 3801

 Score = 31.1 bits (67), Expect = 3.3
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +2

Query: 404  MYVNELISNCLLFIEKLETINKTVKVMNLFVDNSVLYE-CNVCKEISTDERFLKPKE 571
            +Y N L+ N LL +  L+ +N   KV ++ +DN +LY  CN    ++  E+ +   E
Sbjct: 2438 LYDNILLHNALLLL--LQILNSCSKVADMLLDNGLLYVLCNTVAALNGLEKNIPMSE 2492


>AL121997-1|CAI18987.1| 3801|Homo sapiens lysosomal trafficking
            regulator protein.
          Length = 3801

 Score = 31.1 bits (67), Expect = 3.3
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +2

Query: 404  MYVNELISNCLLFIEKLETINKTVKVMNLFVDNSVLYE-CNVCKEISTDERFLKPKE 571
            +Y N L+ N LL +  L+ +N   KV ++ +DN +LY  CN    ++  E+ +   E
Sbjct: 2438 LYDNILLHNALLLL--LQILNSCSKVADMLLDNGLLYVLCNTVAALNGLEKNIPMSE 2492


>BC043409-1|AAH43409.1|  422|Homo sapiens KCNH5 protein protein.
          Length = 422

 Score = 30.7 bits (66), Expect = 4.3
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -3

Query: 193 TVGFGNVGTLIIVIKKFILYSILV---HFQMFIVNYC 92
           T+GFGN+     V K F +  ++V   +F  FI NYC
Sbjct: 374 TIGFGNIAPTTDVEKMFSVAMMMVGCKYFNFFIENYC 410


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,599,248
Number of Sequences: 237096
Number of extensions: 1611556
Number of successful extensions: 4262
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4261
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6691573490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)