Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3o17
         (621 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY119508-1|AAM50162.1|  952|Drosophila melanogaster GH12469p pro...    29   5.1  
AE014297-3031|AAF55912.3|  952|Drosophila melanogaster CG31233-P...    29   5.1  
U82539-1|AAB71337.1|  214|Drosophila melanogaster arrowhead prot...    29   6.7  
BT025230-1|ABF17921.1|  275|Drosophila melanogaster FI01007p pro...    29   6.7  
AY071197-1|AAL48819.1|  275|Drosophila melanogaster RE24382p pro...    29   6.7  
AE014296-705|AAF47800.2|  214|Drosophila melanogaster CG1072-PA,...    29   6.7  
AE014296-704|AAN11572.1|  275|Drosophila melanogaster CG1072-PB,...    29   6.7  

>AY119508-1|AAM50162.1|  952|Drosophila melanogaster GH12469p
           protein.
          Length = 952

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = -1

Query: 537 ISLQT-LHSYKTELSTNKFITLTVLLIVSSFSINNRQFDINSFTYICIEFIFLKQHAKEF 361
           +SL T +H+  T  +    ITL+VL   +   ++ RQ +  +FT   I+    +  A+E 
Sbjct: 69  VSLSTNVHTGDTVFNGTVAITLSVLNTTTKIVVHARQLE--NFTASIIQQGVTEAVAQEL 126

Query: 360 LISFNASRNCFKYG*NTITLPRSRT 286
           +  + A R    +    +T P   T
Sbjct: 127 VYEYEAEREFLTFSKTGLTFPEDTT 151


>AE014297-3031|AAF55912.3|  952|Drosophila melanogaster CG31233-PA
           protein.
          Length = 952

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = -1

Query: 537 ISLQT-LHSYKTELSTNKFITLTVLLIVSSFSINNRQFDINSFTYICIEFIFLKQHAKEF 361
           +SL T +H+  T  +    ITL+VL   +   ++ RQ +  +FT   I+    +  A+E 
Sbjct: 69  VSLSTNVHTGDTVFNGTVAITLSVLNTTTKIVVHARQLE--NFTASIIQQGVTEAVAQEL 126

Query: 360 LISFNASRNCFKYG*NTITLPRSRT 286
           +  + A R    +    +T P   T
Sbjct: 127 VYEYEAEREFLTFSKTGLTFPEDTT 151


>U82539-1|AAB71337.1|  214|Drosophila melanogaster arrowhead
           protein.
          Length = 214

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 509 LYECNVCKEISTDERFLKPKECCEYAICNACCVTM 613
           L  C  C E  +D  FL+   C  +A C  CC+ M
Sbjct: 5   LRSCAACGEPISDRFFLEVGGCSWHAHCLRCCMCM 39


>BT025230-1|ABF17921.1|  275|Drosophila melanogaster FI01007p
           protein.
          Length = 275

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 509 LYECNVCKEISTDERFLKPKECCEYAICNACCVTM 613
           L  C  C E  +D  FL+   C  +A C  CC+ M
Sbjct: 5   LRSCAACGEPISDRFFLEVGGCSWHAHCLRCCMCM 39


>AY071197-1|AAL48819.1|  275|Drosophila melanogaster RE24382p
           protein.
          Length = 275

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 509 LYECNVCKEISTDERFLKPKECCEYAICNACCVTM 613
           L  C  C E  +D  FL+   C  +A C  CC+ M
Sbjct: 5   LRSCAACGEPISDRFFLEVGGCSWHAHCLRCCMCM 39


>AE014296-705|AAF47800.2|  214|Drosophila melanogaster CG1072-PA,
           isoform A protein.
          Length = 214

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 509 LYECNVCKEISTDERFLKPKECCEYAICNACCVTM 613
           L  C  C E  +D  FL+   C  +A C  CC+ M
Sbjct: 5   LRSCAACGEPISDRFFLEVGGCSWHAHCLRCCMCM 39


>AE014296-704|AAN11572.1|  275|Drosophila melanogaster CG1072-PB,
           isoform B protein.
          Length = 275

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 509 LYECNVCKEISTDERFLKPKECCEYAICNACCVTM 613
           L  C  C E  +D  FL+   C  +A C  CC+ M
Sbjct: 5   LRSCAACGEPISDRFFLEVGGCSWHAHCLRCCMCM 39


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,217,992
Number of Sequences: 53049
Number of extensions: 540987
Number of successful extensions: 1728
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1728
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2559155400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)