Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3o17
(621 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49909-15|CAF31470.1| 697|Caenorhabditis elegans Hypothetical p... 33 0.12
Z49909-14|CAA90116.2| 717|Caenorhabditis elegans Hypothetical p... 33 0.12
U97002-11|AAY86259.1| 121|Caenorhabditis elegans Hypothetical p... 32 0.38
U97009-2|AAC69029.3| 342|Caenorhabditis elegans Serpentine rece... 30 1.5
L23651-8|AAK84495.1| 500|Caenorhabditis elegans Hypothetical pr... 29 2.0
U39644-5|AAO44906.1| 300|Caenorhabditis elegans Collagen protei... 28 6.2
Z72505-7|CAA96614.1| 333|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z70780-16|CAA94829.1| 333|Caenorhabditis elegans Hypothetical p... 27 8.2
AF047655-1|AAC04402.1| 558|Caenorhabditis elegans Hypothetical ... 27 8.2
AF016677-5|AAB66143.1| 128|Caenorhabditis elegans Hypothetical ... 27 8.2
>Z49909-15|CAF31470.1| 697|Caenorhabditis elegans Hypothetical
protein C14A4.12b protein.
Length = 697
Score = 33.5 bits (73), Expect = 0.12
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = -1
Query: 501 LSTNKFITLTVLLIVSSFSINNRQFDINSFTYICIEFIFLKQHAKEFLI 355
LS FIT+ + L++ FSIN I SF Y+ F+ + EFL+
Sbjct: 417 LSKFNFITIAISLVLGIFSINATYLHIFSFIYLQKNGYFIDGTSAEFLV 465
>Z49909-14|CAA90116.2| 717|Caenorhabditis elegans Hypothetical
protein C14A4.12a protein.
Length = 717
Score = 33.5 bits (73), Expect = 0.12
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = -1
Query: 501 LSTNKFITLTVLLIVSSFSINNRQFDINSFTYICIEFIFLKQHAKEFLI 355
LS FIT+ + L++ FSIN I SF Y+ F+ + EFL+
Sbjct: 437 LSKFNFITIAISLVLGIFSINATYLHIFSFIYLQKNGYFIDGTSAEFLV 485
>U97002-11|AAY86259.1| 121|Caenorhabditis elegans Hypothetical
protein K09H11.11 protein.
Length = 121
Score = 31.9 bits (69), Expect = 0.38
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -1
Query: 354 SFNASRNCFKYG*NTITLPRSRTPYAP 274
+FN R CFKY +I+ PRSR P+ P
Sbjct: 70 AFNRLRKCFKY--RSISPPRSRAPFPP 94
>U97009-2|AAC69029.3| 342|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 33 protein.
Length = 342
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -1
Query: 501 LSTNKFITLTVLLIVSSFSINNRQFDINSFTYICI 397
LS N FI+L + +I FSI ++F N+ +CI
Sbjct: 118 LSLNSFISLMLSMIYRYFSIRFKRFTANTSIILCI 152
>L23651-8|AAK84495.1| 500|Caenorhabditis elegans Hypothetical
protein C29E4.10 protein.
Length = 500
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +2
Query: 338 RDALKLIKNSFACCFKNINSMQMYVNEL-ISNCLLFIEKLETINKTVKVMNLFVDNSVLY 514
R K+ + S + C +I + + ++ + NC ++E NK V + + FVD S++
Sbjct: 388 RAVQKVTRPSISWCTSHIRTPYAVMADIEVINCRGIFVEIEFSNKKVTIFSDFVDRSIIA 447
Query: 515 ECNVCKEI 538
E +++
Sbjct: 448 EFKARRKV 455
>U39644-5|AAO44906.1| 300|Caenorhabditis elegans Collagen protein
169 protein.
Length = 300
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = -3
Query: 214 RTVVIGKTVGFGNVGTLIIVIKKFILYSILVHFQMFI---VNYCK 89
R ++G TV F TL+ VI ILY+ + H Q + V++C+
Sbjct: 16 RVALVGVTVSFA--ATLVCVIAAPILYNYMQHMQSVMQSEVDFCR 58
>Z72505-7|CAA96614.1| 333|Caenorhabditis elegans Hypothetical
protein C50C10.1 protein.
Length = 333
Score = 27.5 bits (58), Expect = 8.2
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = -1
Query: 561 FKNLSSVDISLQTLHSYKTELSTNKFITLTVLLIVSSFSINNRQFDINSFTYICIEFIFL 382
FK L IS + LH KT+L + K +T T++LI+ + +N F +IFL
Sbjct: 226 FKLLQKRKISSE-LHR-KTDLKSEKVLTATMILILLPVVVPATLSFVNLFAPSAYPYIFL 283
Query: 381 KQ 376
+
Sbjct: 284 SR 285
>Z70780-16|CAA94829.1| 333|Caenorhabditis elegans Hypothetical
protein C50C10.1 protein.
Length = 333
Score = 27.5 bits (58), Expect = 8.2
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = -1
Query: 561 FKNLSSVDISLQTLHSYKTELSTNKFITLTVLLIVSSFSINNRQFDINSFTYICIEFIFL 382
FK L IS + LH KT+L + K +T T++LI+ + +N F +IFL
Sbjct: 226 FKLLQKRKISSE-LHR-KTDLKSEKVLTATMILILLPVVVPATLSFVNLFAPSAYPYIFL 283
Query: 381 KQ 376
+
Sbjct: 284 SR 285
>AF047655-1|AAC04402.1| 558|Caenorhabditis elegans Hypothetical
protein C17B7.8 protein.
Length = 558
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 443 IEKLETINKTVKVMNLFVDNSVLYECNVCKEI-STDERF 556
+EKLE IN T K F + CN+ + + ST ++F
Sbjct: 116 VEKLENINLTNKFKKFFEKRFSKFNCNLAQNLYSTFKKF 154
>AF016677-5|AAB66143.1| 128|Caenorhabditis elegans Hypothetical
protein ZK1240.6 protein.
Length = 128
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +2
Query: 509 LYECNVCKE--ISTDERFLKPKECCEYAICNAC 601
L+EC VC E DE + C ++IC +C
Sbjct: 3 LFECKVCNENYSDVDESHVPRVLTCGHSICQSC 35
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,946,284
Number of Sequences: 27780
Number of extensions: 299416
Number of successful extensions: 978
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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