Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3o17
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   2.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.5  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   7.3  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   7.3  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   7.3  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 155 YYDQCADIAKPDRLPDDDGACCHHFIFDAQR 247
           +Y++ A   +PDR   D G      +FD  R
Sbjct: 246 HYERRATPPQPDRTSKDQGTIGESEVFDTTR 276


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 573 HSFGFKNLSSVDISLQTLHS 514
           HS   +N  SV I  +TLH+
Sbjct: 319 HSTDIQNCDSVKIKFETLHT 338


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 609  VTQHALHIAYSQHSFGFKNLSSVDISL 529
            V   AL   YSQ  F    + ++D+SL
Sbjct: 1343 VPSDALIALYSQGLFSLSEIDNLDVSL 1369


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 350 KLIKNSFACCFKNINSMQMYVNELISN 430
           K++ N F     N   M   VNELI N
Sbjct: 387 KMVNNDFNFDDVNFRIMNANVNELILN 413


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 350 KLIKNSFACCFKNINSMQMYVNELISN 430
           K++ N F     N   M   VNELI N
Sbjct: 387 KMVNNDFNFDDVNFRIMNANVNELILN 413


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 350 KLIKNSFACCFKNINSMQMYVNELISN 430
           K++ N F     N   M   VNELI N
Sbjct: 387 KMVNNDFNFDDVNFRIMNANVNELILN 413


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,405
Number of Sequences: 438
Number of extensions: 3433
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)