Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3o14
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    78   1e-15
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.5  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    26   4.4  
SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces ...    26   4.4  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   5.8  
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    25   7.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   7.7  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   7.7  

>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1207

 Score = 78.2 bits (184), Expect = 1e-15
 Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 3/136 (2%)
 Frame = +3

Query: 276  QLQQSYQLTTAGRFPEAIERLQGVAQRVPLLLVDSKAELSEAQQLLAVCRDYLVGLAMET 455
            +L ++Y+L  A +  EA    + +       + +S+ E  E   L+  C  Y+V L+ E 
Sbjct: 999  ELHEAYRLVKANKILEAQICFRSIIYLALTTVANSEEEADEISALIDECCRYIVALSCEL 1058

Query: 456  ARKAMPKNTVDEQKRTCEMAAYFTHCKLQPVHQILTLRTALNMFFKLKNYRTAASFARRL 635
             R+ + +   ++ KR  E++ YF    LQP+H I+ LR A+N   KLKNY++A+    +L
Sbjct: 1059 ERRRLGE---EDTKRALELSYYFASADLQPMHSIIALRLAINASHKLKNYKSASFLGNKL 1115

Query: 636  LEL---GPRPEVAQQA 674
            L+L   GP  E A +A
Sbjct: 1116 LQLAESGPAAEAANRA 1131


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -2

Query: 243 GRPVLPPPQPAGGGRTPP 190
           GRPV P P    GG  PP
Sbjct: 327 GRPVAPRPSAGAGGANPP 344


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
 Frame = -2

Query: 309 PPWSTGSSAAADSPSRLASTLIGRPVLPPPQPAG------GGRTPPWRSACFITLQSTST 148
           P  +T     +++PSR  S+   +P    P PA        G  PP  S       +T+T
Sbjct: 101 PNQTTAMPPPSNNPSRHVSSTSNKPAAVSPNPAAHHAELPSGSVPPSASVSRANSTATTT 160

Query: 147 QH 142
            H
Sbjct: 161 PH 162


>SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 539

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 28  LSRATAVLATRHQNFLIPTFELRVLEDYRNINRSLLVYVLC 150
           L R  + LAT +Q  L+  FEL+   + R++  S ++  LC
Sbjct: 142 LDRNLSGLATSYQTILLKMFELKRGIESRDLLMSSIISYLC 182


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -2

Query: 312  GPPWSTGSSAAADS-PSRLASTLIGRPVLPPPQPAGGGRT 196
            GPP +  +SA   + P   A+ + G P +P P P  G  T
Sbjct: 1894 GPPSAAPTSALPPAGPPAGATAISGNPGMPAPVPLTGKET 1933


>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/62 (24%), Positives = 26/62 (41%)
 Frame = +3

Query: 474 KNTVDEQKRTCEMAAYFTHCKLQPVHQILTLRTALNMFFKLKNYRTAASFARRLLELGPR 653
           +N +D   + C MA   T  ++   H     + +L  +  LKN     +   R+L L   
Sbjct: 329 QNKLDTGSQVCNMAWSKTSNEIVTTHGFAKNQVSLWKYPSLKNIANLTAHTNRVLYLSMS 388

Query: 654 PE 659
           P+
Sbjct: 389 PD 390


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = -2

Query: 285 AAADSPSRLASTLIGRPVLPPPQP--AGGGRTPP 190
           A A  P    + ++G P  PPP P  AG G  PP
Sbjct: 745 APAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = +3

Query: 258  LSDLVSQLQQSYQLTTAGRFPEAIERLQGVAQRVPLLLVDSKAELSEAQ 404
            L D   QLQ+S          E  E+L+   +R    L DSK EL   Q
Sbjct: 1463 LKDSNHQLQESASSDAEQITKEQFEQLKSEKERTEKELADSKNELEHLQ 1511


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,311,452
Number of Sequences: 5004
Number of extensions: 42470
Number of successful extensions: 163
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)