Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3o14
(682 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter... 25 0.67
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.7
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.7
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.7
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.7
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.7
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.7
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 4.7
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 4.7
AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein. 22 6.2
AB204559-1|BAD89804.1| 832|Apis mellifera soluble guanylyl cycl... 22 6.2
>AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter
transporter-1A protein.
Length = 203
Score = 25.0 bits (52), Expect = 0.67
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 172 KTCGAPGRRSASSCWLRRRQHRS 240
K C P R + SCWL+ +H +
Sbjct: 108 KNCVNPYDRDSLSCWLQMTKHHN 130
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.7
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 206 PPAGCGGGSTGRPISVEAKRLGESAAAELPV 298
PP+G + G PIS E +A LP+
Sbjct: 361 PPSGYIRSAFGTPISTGRPATVEDTSASLPL 391
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.7
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 206 PPAGCGGGSTGRPISVEAKRLGESAAAELPV 298
PP+G + G PIS E +A LP+
Sbjct: 361 PPSGYIRSAFGTPISTGRPATVEDTSASLPL 391
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.7
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 206 PPAGCGGGSTGRPISVEAKRLGESAAAELPV 298
PP+G + G PIS E +A LP+
Sbjct: 361 PPSGYIRSAFGTPISTGRPATVEDTSASLPL 391
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.7
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 206 PPAGCGGGSTGRPISVEAKRLGESAAAELPV 298
PP+G + G PIS E +A LP+
Sbjct: 361 PPSGYIRSAFGTPISTGRPATVEDTSASLPL 391
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.7
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 206 PPAGCGGGSTGRPISVEAKRLGESAAAELPV 298
PP+G + G PIS E +A LP+
Sbjct: 361 PPSGYIRSAFGTPISTGRPATVEDTSASLPL 391
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.7
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 206 PPAGCGGGSTGRPISVEAKRLGESAAAELPV 298
PP+G + G PIS E +A LP+
Sbjct: 361 PPSGYIRSAFGTPISTGRPATVEDTSASLPL 391
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 4.7
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 206 PPAGCGGGSTGRPISVEAKRLGESAAAELPV 298
PP+G + G PIS E +A LP+
Sbjct: 429 PPSGYIRSAFGTPISTGRPATVEDTSASLPL 459
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 4.7
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 206 PPAGCGGGSTGRPISVEAKRLGESAAAELPV 298
PP+G + G PIS E +A LP+
Sbjct: 429 PPSGYIRSAFGTPISTGRPATVEDTSASLPL 459
>AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein.
Length = 996
Score = 21.8 bits (44), Expect = 6.2
Identities = 6/12 (50%), Positives = 8/12 (66%)
Frame = +1
Query: 211 CWLRRRQHRSTY 246
CW + R HR T+
Sbjct: 874 CWQKERTHRPTF 885
>AB204559-1|BAD89804.1| 832|Apis mellifera soluble guanylyl cyclase
beta-3 protein.
Length = 832
Score = 21.8 bits (44), Expect = 6.2
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +1
Query: 190 GRRSASSCWLRRRQHRST 243
G+ + WL +R+HRS+
Sbjct: 586 GKGIMKTYWLEKREHRSS 603
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,216
Number of Sequences: 438
Number of extensions: 3254
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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