Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3o13
         (724 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q538A5 Cluster: Chorion b-ZIP transcription factor; n=1...   259   6e-68
UniRef50_UPI000150A899 Cluster: hypothetical protein TTHERM_0042...    39   0.11 
UniRef50_A2DB19 Cluster: Clan CA, family C19, ubiquitin hydrolas...    37   0.58 
UniRef50_Q2ULG4 Cluster: Microtubule-associated protein; n=4; Pe...    35   1.8  
UniRef50_Q5F342 Cluster: Putative uncharacterized protein; n=11;...    34   3.1  
UniRef50_A0DDB5 Cluster: Chromosome undetermined scaffold_46, wh...    34   3.1  
UniRef50_Q291I7 Cluster: GA14690-PA; n=1; Drosophila pseudoobscu...    34   4.1  
UniRef50_Q7V1N6 Cluster: ABC transporter, possibly multidrug eff...    33   5.4  
UniRef50_A7RUX9 Cluster: Predicted protein; n=1; Nematostella ve...    33   5.4  
UniRef50_A7PT04 Cluster: Chromosome chr8 scaffold_29, whole geno...    33   7.1  
UniRef50_Q29B90 Cluster: GA18691-PA; n=1; Drosophila pseudoobscu...    33   7.1  
UniRef50_A7RXC9 Cluster: Predicted protein; n=1; Nematostella ve...    33   7.1  
UniRef50_Q5BYN7 Cluster: SJCHGC09281 protein; n=1; Schistosoma j...    33   9.4  
UniRef50_Q9Z6Z6 Cluster: tRNA delta(2)-isopentenylpyrophosphate ...    33   9.4  

>UniRef50_Q538A5 Cluster: Chorion b-ZIP transcription factor; n=1;
           Bombyx mori|Rep: Chorion b-ZIP transcription factor -
           Bombyx mori (Silk moth)
          Length = 512

 Score =  259 bits (634), Expect = 6e-68
 Identities = 121/121 (100%), Positives = 121/121 (100%)
 Frame = +2

Query: 362 MVFSQTSLKTRNILKVVDLDRLKPEKNQQANGLTGVIHQGNNGVMPQGTVPTASFSEEYL 541
           MVFSQTSLKTRNILKVVDLDRLKPEKNQQANGLTGVIHQGNNGVMPQGTVPTASFSEEYL
Sbjct: 1   MVFSQTSLKTRNILKVVDLDRLKPEKNQQANGLTGVIHQGNNGVMPQGTVPTASFSEEYL 60

Query: 542 KPEQLYASTMLHGSNSEFFQELDQLCSDPEREEQTRTIDSHKETEKRACSFDTPHTSFCL 721
           KPEQLYASTMLHGSNSEFFQELDQLCSDPEREEQTRTIDSHKETEKRACSFDTPHTSFCL
Sbjct: 61  KPEQLYASTMLHGSNSEFFQELDQLCSDPEREEQTRTIDSHKETEKRACSFDTPHTSFCL 120

Query: 722 Q 724
           Q
Sbjct: 121 Q 121


>UniRef50_UPI000150A899 Cluster: hypothetical protein TTHERM_00420720;
            n=1; Tetrahymena thermophila SB210|Rep: hypothetical
            protein TTHERM_00420720 - Tetrahymena thermophila SB210
          Length = 946

 Score = 39.1 bits (87), Expect = 0.11
 Identities = 33/138 (23%), Positives = 65/138 (47%), Gaps = 9/138 (6%)
 Frame = +2

Query: 311  VGATISELNTPIQTPKDMVFSQTSLKTRNILKVVDLDRLKP------EKNQQANGLTGVI 472
            V  T++ELNT  QT  D+++ QT  K +++++     +L+       EKN+  N LT ++
Sbjct: 774  VQRTLNELNTSKQTSNDIIYLQTQKKIKDVVRQARQQQLEQQLMKDKEKNENEN-LT-LL 831

Query: 473  HQGNNGVMPQGTVPTASFSEEYLKPEQLYASTML---HGSNSEFFQELDQLCSDPEREEQ 643
            +   + + P       + S++      LY +  +   + S  EF ++ +QLC   E +++
Sbjct: 832  NANQSIISPTENNNINNNSKQQNNKIVLYENNSIINKYESREEFVKQYEQLCKKIEEKQK 891

Query: 644  TRTIDSHKETEKRACSFD 697
                   +E  +    FD
Sbjct: 892  QIKFMEEEELMRIIREFD 909


>UniRef50_A2DB19 Cluster: Clan CA, family C19, ubiquitin
           hydrolase-like cysteine peptidase; n=1; Trichomonas
           vaginalis G3|Rep: Clan CA, family C19, ubiquitin
           hydrolase-like cysteine peptidase - Trichomonas
           vaginalis G3
          Length = 1252

 Score = 36.7 bits (81), Expect = 0.58
 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
 Frame = +2

Query: 326 SELNTPIQTPKDMVFSQTSLKTRNILKVVDLDRLKPEKNQQANGLTGVIHQGNN----GV 493
           S  +TP    K   FS  + K +   KV+DL   KPEK ++   L  +I    +      
Sbjct: 291 SRKDTPTYASKLNPFSFAAKKEKQEEKVLDLGDRKPEKEEKEENLDKIIQNKKSTFTPAS 350

Query: 494 MPQGTVPTASFSEEYLKPEQLYASTMLHGSNSEFF 598
           MP  ++PT    E ++  +   A+  L+ +   FF
Sbjct: 351 MPASSLPTPKIVEGFVGLQNQGATCYLNSAIQSFF 385


>UniRef50_Q2ULG4 Cluster: Microtubule-associated protein; n=4;
           Pezizomycotina|Rep: Microtubule-associated protein -
           Aspergillus oryzae
          Length = 903

 Score = 35.1 bits (77), Expect = 1.8
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 322 DIGTQYTNPNTKRHGFFANESQDSKHFESSRPRSFKARKEPTGERSNRS-DSP 477
           D G+ Y +  +  HG  A        FESSRPRS+ A   P+ E+ N   +SP
Sbjct: 767 DAGSVYQDTASNGHGPLARGYHSGSRFESSRPRSY-ASASPSEEKENSGLESP 818


>UniRef50_Q5F342 Cluster: Putative uncharacterized protein; n=11;
           Tetrapoda|Rep: Putative uncharacterized protein - Gallus
           gallus (Chicken)
          Length = 855

 Score = 34.3 bits (75), Expect = 3.1
 Identities = 19/72 (26%), Positives = 34/72 (47%)
 Frame = +1

Query: 250 SSRRVQSILYKMVAQKITCPSRSDDIGTQYTNPNTKRHGFFANESQDSKHFESSRPRSFK 429
           +++  +S     +A+K + PS  DD       P  K+ G F++E      F SS+  + K
Sbjct: 40  TTKEAESEKETAIAKK-SQPSSGDDFKPSSETPQRKQRGLFSDEEDSEDLFSSSKTVTSK 98

Query: 430 ARKEPTGERSNR 465
           A   PT + + +
Sbjct: 99  ATSLPTSKSTTK 110


>UniRef50_A0DDB5 Cluster: Chromosome undetermined scaffold_46, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_46,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1356

 Score = 34.3 bits (75), Expect = 3.1
 Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
 Frame = +2

Query: 248 GAQEEFNQFYTKWLLKRSPARVGATISELNTPIQTPKDMVFSQTSLKTRNIL-KVVDLDR 424
           G Q+EFN     +L+++  A+      + N  I   KD+   + ++K ++ L +++D++ 
Sbjct: 310 GLQDEFNTVKEAFLIEKENAKTFMEKLQENQEIYKQKDVANQELTIKNQSQLQRIIDVES 369

Query: 425 LKPEKNQQANGLTGVIHQGNNGVMPQ 502
                NQQ   L     + NN ++ Q
Sbjct: 370 QINLLNQQILSLNRQKEESNNEILQQ 395


>UniRef50_Q291I7 Cluster: GA14690-PA; n=1; Drosophila
           pseudoobscura|Rep: GA14690-PA - Drosophila pseudoobscura
           (Fruit fly)
          Length = 763

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 488 GVMPQGTVPTASFSEEYLKPEQLYASTML 574
           G++P G  P  SF EE+L+  QLYA  ++
Sbjct: 256 GLLPLGGPPAGSFQEEFLRKSQLYAEELM 284


>UniRef50_Q7V1N6 Cluster: ABC transporter, possibly multidrug
           efflux; n=4; Prochlorococcus marinus|Rep: ABC
           transporter, possibly multidrug efflux - Prochlorococcus
           marinus subsp. pastoris (strain CCMP 1378 / MED4)
          Length = 606

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 8/119 (6%)
 Frame = +2

Query: 125 FFTKTESHRTLVLKDLHTFIVLRPTLGTVSC--------LGA*RVNISLGAQEEFNQFYT 280
           F TK  S++    K L    +  P +G +          LGA R+N+ L   EEF+ F+ 
Sbjct: 254 FNTKLRSNKQAKYKTLKLLAIQHPIVGFIEAFGILAILGLGALRINLGLLNSEEFSSFFA 313

Query: 281 KWLLKRSPARVGATISELNTPIQTPKDMVFSQTSLKTRNILKVVDLDRLKPEKNQQANG 457
             L+   P      IS ++T     K    S   LK  N ++ ++ D    EK  + NG
Sbjct: 314 AILMLIDP------ISHISTNFNEYKQAEASLKRLKKIN-MQPMEKDEQNLEKITRING 365


>UniRef50_A7RUX9 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 464

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 18/61 (29%), Positives = 33/61 (54%)
 Frame = +2

Query: 500 QGTVPTASFSEEYLKPEQLYASTMLHGSNSEFFQELDQLCSDPEREEQTRTIDSHKETEK 679
           +G+      SE     +Q   S+    S+++ F E ++L SD E+E+  R ++S +ET+ 
Sbjct: 73  EGSYKGQGDSENDQDMDQDSTSSKQKVSHADLFGEDEELSSDEEKEDNAREVESKEETQA 132

Query: 680 R 682
           R
Sbjct: 133 R 133


>UniRef50_A7PT04 Cluster: Chromosome chr8 scaffold_29, whole genome
           shotgun sequence; n=3; Vitis vinifera|Rep: Chromosome
           chr8 scaffold_29, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 320

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +1

Query: 307 PSRSDDIGTQYTNPNTKRHGFFANESQDSKHFESSRPRSFKARKEPTGERS 459
           PS  D      T+P T R   + N+S+DS    S++P   +A K  TGE +
Sbjct: 226 PSSRDSAAESRTDPETDRDSEYLNQSEDSTSERSTKPTKTEAFK--TGEEA 274


>UniRef50_Q29B90 Cluster: GA18691-PA; n=1; Drosophila
           pseudoobscura|Rep: GA18691-PA - Drosophila pseudoobscura
           (Fruit fly)
          Length = 1013

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
 Frame = +3

Query: 483 TTE*CLKEQCQQPAF---PRNI*NRNSYTRAQCFTVRTQSSSKNWISCAPIQKGKNKHGP 653
           +TE  + E C  P     P    NR +  +   FTVR    +     C    KG++ H  
Sbjct: 377 STEEWVVENCNSPVLTETPTKCSNRLNCVQKH-FTVRKTPQTTVRSKCRDRGKGQSPH-- 433

Query: 654 LILIKKPKNGHVPSTHRTHH 713
            ILIKK  + H P   RTHH
Sbjct: 434 -ILIKKSAS-HTPRRQRTHH 451


>UniRef50_A7RXC9 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 1529

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 261 SSINSIQNGCSKDHLPESERRYRNSIHQSKHQKTWFFRKRVSRLE 395
           S ++ IQ+G SKD   E++   ++ I ++ H K W  +  V  L+
Sbjct: 154 SKLDEIQDGLSKDEFAETQDGLKDQIKKNHHVKKWIVKAPVEILQ 198


>UniRef50_Q5BYN7 Cluster: SJCHGC09281 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC09281 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 194

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +2

Query: 242 SLGAQEEFNQFYTKWLLKRSPARVGATISELNTPIQTP-KDMVFSQTSLKTRNILKVV 412
           +L   + F  FY  WLL R    V +T+  L      P K ++FS  SLK  NI  ++
Sbjct: 137 NLDLVDTFVMFYAVWLLSRRSGPVWSTLMGLFIISMAPLKSILFSLLSLKIENIFTML 194


>UniRef50_Q9Z6Z6 Cluster: tRNA delta(2)-isopentenylpyrophosphate
           transferase; n=8; Chlamydiaceae|Rep: tRNA
           delta(2)-isopentenylpyrophosphate transferase -
           Chlamydia pneumoniae (Chlamydophila pneumoniae)
          Length = 342

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 267 INSIQNGCSKDHLPESERRY-RNSIHQSKHQKTWFFRKRVSR 389
           I  + NG   +   E++R++  NS H +K QKTWF R  + R
Sbjct: 277 IEFLDNGEKLEEYEETKRKFVSNSWHYTKKQKTWFKRYSIFR 318


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 683,409,827
Number of Sequences: 1657284
Number of extensions: 13326513
Number of successful extensions: 41740
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 40059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41720
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58677691418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)