Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3o12
(805 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181; Eukary... 129 9e-29
UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeb... 77 4e-13
UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus M... 76 1e-12
UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5... 74 5e-12
UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2; Methano... 72 2e-11
UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 64 3e-09
UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella... 60 5e-08
UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3; Euth... 60 8e-08
UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8; Euryarc... 60 8e-08
UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12; Archae... 58 3e-07
UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultu... 58 3e-07
UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1; Encephal... 56 1e-06
UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcu... 54 3e-06
UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3; Thermop... 52 1e-05
UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3; Halobac... 52 2e-05
UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5; Thermop... 50 5e-05
UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3; Methano... 49 1e-04
UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2; Sulfolo... 49 2e-04
UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1; ... 47 5e-04
UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n... 46 0.001
UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 42 0.024
UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1... 40 0.055
UniRef50_A4C1Y1 Cluster: Putative outer membrane protein; n=1; P... 36 1.2
UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n... 35 2.8
UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n... 35 2.8
UniRef50_Q4P328 Cluster: Helicase SWR1; n=1; Ustilago maydis|Rep... 33 6.4
>UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181;
Eukaryota|Rep: 40S ribosomal protein S9 - Homo sapiens
(Human)
Length = 194
Score = 129 bits (311), Expect = 9e-29
Identities = 59/67 (88%), Positives = 65/67 (97%)
Frame = +1
Query: 478 VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 657
V KTYVTPRRPFEK+RLDQELK+IGEYGLRNKREVWRVK+TLA+IRKAARELLTL+EKD
Sbjct: 8 VCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKD 67
Query: 658 PKRLFEG 678
P+RLFEG
Sbjct: 68 PRRLFEG 74
>UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeba
histolytica|Rep: 40S ribosomal protein S9 - Entamoeba
histolytica
Length = 185
Score = 77.4 bits (182), Expect = 4e-13
Identities = 33/65 (50%), Positives = 47/65 (72%)
Frame = +1
Query: 484 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 663
S TY TP+ P+E+ R D ELK++G++GL+NK+E+ RV Y L +R A+ +L + KDPK
Sbjct: 9 SITYKTPKVPYERERFDAELKLVGQFGLKNKKEIQRVHYMLGHMRTIAKVMLMKDAKDPK 68
Query: 664 RLFEG 678
RL EG
Sbjct: 69 RLLEG 73
>UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S4 -
Methanoregula boonei (strain 6A8)
Length = 185
Score = 75.8 bits (178), Expect = 1e-12
Identities = 33/58 (56%), Positives = 44/58 (75%)
Frame = +1
Query: 472 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 645
P K+Y TP+RPFEK R+++E +++ EYGLRNKREVW+ + L + RKAARELL L
Sbjct: 4 PGKNHKSYQTPKRPFEKTRIEEETRLVIEYGLRNKREVWKAQSHLRKYRKAARELLAL 61
>UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5;
Oryza sativa|Rep: 40S ribosomal protein S9, putative -
Oryza sativa subsp. japonica (Rice)
Length = 157
Score = 73.7 bits (173), Expect = 5e-12
Identities = 39/79 (49%), Positives = 51/79 (64%)
Frame = +1
Query: 481 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 660
+ KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV +ELLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRV-----------QELLTLDEKNP 58
Query: 661 KRLFEGT*TNYFINGYSQL 717
+R+FEG +N Y L
Sbjct: 59 RRIFEGEALLRHMNRYGLL 77
>UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2;
Methanomicrobiales|Rep: 30S ribosomal protein S4P -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 181
Score = 71.7 bits (168), Expect = 2e-11
Identities = 31/59 (52%), Positives = 43/59 (72%)
Frame = +1
Query: 472 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLE 648
P K Y TP+RPFE +R+++E +++ EYGLRNKREVW K L + RKAARE++ L+
Sbjct: 4 PGKNHKQYQTPKRPFELSRIEEETRLVIEYGLRNKREVWIAKGALRKYRKAAREIIALQ 62
>UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Thermoplasma
volcanium
Length = 200
Score = 64.5 bits (150), Expect = 3e-09
Identities = 29/55 (52%), Positives = 38/55 (69%)
Frame = +1
Query: 472 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAREL 636
P K Y TPR P+EK R+D+E KI+ +YGL+NKRE+WR + L+ IR AR L
Sbjct: 4 PKFHHKKYSTPRHPWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYL 58
>UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella
natans|Rep: Ribosomal protein S9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 180
Score = 60.5 bits (140), Expect = 5e-08
Identities = 24/58 (41%), Positives = 42/58 (72%)
Frame = +1
Query: 481 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEK 654
+SK + P+ P+EK RL E+++I +GL+NKRE+WR ++ L+++RK A +L+ + K
Sbjct: 10 YSKIWNRPKNPYEKLRLCNEIRMINLFGLKNKRELWRTQFFLSKLRKVAEKLIYKKAK 67
>UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3;
Eutheria|Rep: Ribosomal subunit protein S9 - Trichechus
manatus latirostris
Length = 30
Score = 59.7 bits (138), Expect = 8e-08
Identities = 26/30 (86%), Positives = 30/30 (100%)
Frame = +1
Query: 583 VWRVKYTLARIRKAARELLTLEEKDPKRLF 672
VWRVK+TLA+IRKAARELLTL+EKDP+RLF
Sbjct: 1 VWRVKFTLAKIRKAARELLTLDEKDPRRLF 30
>UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S4P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 219
Score = 59.7 bits (138), Expect = 8e-08
Identities = 26/56 (46%), Positives = 38/56 (67%)
Frame = +1
Query: 472 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 639
P SK+Y TPR P+++AR+ E++++ YGLRNK+EVW+ L R AR+LL
Sbjct: 4 PGKKSKSYETPRHPWQEARMAAEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLL 59
>UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12;
Archaea|Rep: 30S ribosomal protein S4P - Methanococcus
jannaschii
Length = 187
Score = 58.0 bits (134), Expect = 3e-07
Identities = 24/54 (44%), Positives = 37/54 (68%)
Frame = +1
Query: 481 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 642
F KTY TP P+ K R+++E ++ +YGLR KREVW+ + L + R+ AR L++
Sbjct: 8 FKKTYETPNHPWIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQARRLIS 61
>UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultured
methanogenic archaeon RC-I|Rep: 30S ribosomal protein
S4P - Uncultured methanogenic archaeon RC-I
Length = 205
Score = 57.6 bits (133), Expect = 3e-07
Identities = 25/56 (44%), Positives = 35/56 (62%)
Frame = +1
Query: 472 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 639
P K Y TP P++KAR+D+E ++ +YGLRNK+ VW+ L + R AR LL
Sbjct: 4 PGQAKKLYDTPNHPWQKARIDEETSLVKKYGLRNKKSVWKHASDLRKYRSNARALL 59
>UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S9 -
Encephalitozoon cuniculi
Length = 184
Score = 56.0 bits (129), Expect = 1e-06
Identities = 26/53 (49%), Positives = 37/53 (69%)
Frame = +1
Query: 484 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 642
SK TPR PFEK RL +E +++G YGL+NK E+W ++ A+ ++ AR LLT
Sbjct: 7 SKRASTPRDPFEKERLIREAQLVGVYGLKNKHELWVMEKIFAKDKERARILLT 59
>UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcus
aeolicus Nankai-3|Rep: Ribosomal protein S4 -
Methanococcus aeolicus Nankai-3
Length = 177
Score = 54.4 bits (125), Expect = 3e-06
Identities = 23/57 (40%), Positives = 37/57 (64%)
Frame = +1
Query: 472 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 642
P SKTY TP P+ R+ QE ++ +YGL NK+E+W+++ L R+ AR+L++
Sbjct: 4 PRRLSKTYDTPNHPWIGERIKQERELSNKYGLSNKKEIWKMETRLRTFRRQARKLIS 60
>UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3;
Thermoprotei|Rep: 30S ribosomal protein S4P -
Cenarchaeum symbiosum
Length = 205
Score = 52.4 bits (120), Expect = 1e-05
Identities = 24/65 (36%), Positives = 39/65 (60%)
Frame = +1
Query: 472 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 651
P + + + P+RPF +EL+ +G +GLR KRE+W+ L+R+R AR LL L +
Sbjct: 4 PKLPRRMWRKPKRPFNYDLKMEELRTLGTFGLRTKRELWKAHTELSRVRNQARSLLALGQ 63
Query: 652 KDPKR 666
+ +R
Sbjct: 64 EVRER 68
>UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S4P -
Halobacterium salinarium (Halobacterium halobium)
Length = 170
Score = 52.0 bits (119), Expect = 2e-05
Identities = 22/57 (38%), Positives = 34/57 (59%)
Frame = +1
Query: 469 VPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 639
+P +K Y TP P++ R+ +E ++ YGL+NK E+WR + L R+ AR LL
Sbjct: 3 LPGENTKFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL 59
>UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S4P -
Pyrobaculum aerophilum
Length = 159
Score = 50.4 bits (115), Expect = 5e-05
Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Frame = +1
Query: 502 PRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL--TLEEKDP 660
P++ + K L +EL+++GEYGLRNK+E+W + L I + AR LL T EE+ P
Sbjct: 16 PKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERAP 70
>UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 182
Score = 49.2 bits (112), Expect = 1e-04
Identities = 19/54 (35%), Positives = 35/54 (64%)
Frame = +1
Query: 487 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLE 648
K Y TP P+ R+ +E ++ +YGL+NK+E+W+ + + R R+ AR +L ++
Sbjct: 9 KQYDTPSHPWNADRIKEENRLANKYGLKNKKEIWKAESRVKRYRRDARIILGMD 62
>UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2;
Sulfolobaceae|Rep: 30S ribosomal protein S4P -
Sulfolobus tokodaii
Length = 177
Score = 48.8 bits (111), Expect = 2e-04
Identities = 22/58 (37%), Positives = 34/58 (58%)
Frame = +1
Query: 472 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 645
P + + P P+ + L++E +IG+YGLRNKRE+W + + + R AR LL L
Sbjct: 4 PKKSRRKWEGPGHPWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLAL 61
>UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 187
Score = 47.2 bits (107), Expect = 5e-04
Identities = 23/53 (43%), Positives = 32/53 (60%)
Frame = +1
Query: 481 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 639
+ KT+ R + K LD ELK IG Y LR KRE+W V+ +LA ++K L+
Sbjct: 119 YGKTFKESRSSYGKGFLDAELKFIGGYELRCKRELWSVQMSLAALQKYFSSLM 171
>UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000501C59 UniRef100 entry -
Rattus norvegicus
Length = 199
Score = 46.0 bits (104), Expect = 0.001
Identities = 23/33 (69%), Positives = 26/33 (78%), Gaps = 1/33 (3%)
Frame = +1
Query: 580 EVWRVKYTLARIRKAARE-LLTLEEKDPKRLFE 675
EVWRVK+TL +IRKA E LL L EKDP+ LFE
Sbjct: 41 EVWRVKFTLTKIRKAFWELLLLLNEKDPRYLFE 73
>UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Nanoarchaeum
equitans
Length = 180
Score = 41.5 bits (93), Expect = 0.024
Identities = 20/50 (40%), Positives = 32/50 (64%)
Frame = +1
Query: 502 PRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 651
P P++K RL E +++ EYGL+NKRE+W + T+AR +A L ++
Sbjct: 11 PSHPWQKQRLIIEKRLMKEYGLKNKRELW-IAETIARKWRAYARYLNAKQ 59
>UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1;
uncultured euryarchaeote ARMAN-2|Rep: Ribosomal protein
small subunit S9 - uncultured euryarchaeote ARMAN-2
Length = 187
Score = 40.3 bits (90), Expect = 0.055
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = +1
Query: 487 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 642
+ Y P+ + AR+ + +I EYGL N E+W+V+ ++R+R R LL+
Sbjct: 9 RKYDKPKDIWNLARIKADNALIAEYGLANMHELWKVQSEISRLRGNVRVLLS 60
>UniRef50_A4C1Y1 Cluster: Putative outer membrane protein; n=1;
Polaribacter irgensii 23-P|Rep: Putative outer membrane
protein - Polaribacter irgensii 23-P
Length = 591
Score = 35.9 bits (79), Expect = 1.2
Identities = 17/43 (39%), Positives = 28/43 (65%)
Frame = +1
Query: 583 VWRVKYTLARIRKAARELLTLEEKDPKRLFEGT*TNYFINGYS 711
+W++ Y++ +I A +LT+EE+D +RL E YF+ GYS
Sbjct: 115 IWKINYSIEKIASAPENILTVEERD-ERLGE----LYFLRGYS 152
>UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 09 contig 1, DNA
sequence - Ostreococcus tauri
Length = 293
Score = 34.7 bits (76), Expect = 2.8
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = -2
Query: 591 APYFTLVAETVLSDDLQLLVKTCLFKRTTRCHVRL 487
AP +LVA+ L+DDLQL V+ L +RT+R RL
Sbjct: 167 APQLSLVAKAELTDDLQLGVEAILLERTSRLLERL 201
>UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n=1;
Encephalitozoon cuniculi|Rep: U3 SMALL NUCLEOLAR
RIBONUCLEOPROTEIN - Encephalitozoon cuniculi
Length = 180
Score = 34.7 bits (76), Expect = 2.8
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 550 IGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 666
I +YGLR++ E + + ++RK A L L+E DP R
Sbjct: 32 IAKYGLRDREEYTKYSRIVGKVRKLAEALARLKESDPVR 70
>UniRef50_Q4P328 Cluster: Helicase SWR1; n=1; Ustilago maydis|Rep:
Helicase SWR1 - Ustilago maydis (Smut fungus)
Length = 1830
Score = 33.5 bits (73), Expect = 6.4
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +1
Query: 517 EKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRL 669
EK ++ L+ + ++ LR + WR+ + R RKAA E E+ D ++L
Sbjct: 615 EKKAEERRLRALAKWTLREVLKQWRLAVNVVRARKAAAEKAEKEKSDKEQL 665
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 747,154,618
Number of Sequences: 1657284
Number of extensions: 14317013
Number of successful extensions: 28210
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 27468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28206
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69143070360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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