Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3o12
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...   113   3e-26
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...   113   3e-26
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.4  
SPBC18E5.13 ||SPBC23G7.03|translation initiation factor |Schizos...    27   2.4  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    26   7.2  
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    25   9.5  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   9.5  

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score =  113 bits (272), Expect = 3e-26
 Identities = 52/69 (75%), Positives = 58/69 (84%)
 Frame = +1

Query: 472 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 651
           P   SKTY  PRRPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+E
Sbjct: 5   PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64

Query: 652 KDPKRLFEG 678
           KDPKRLFEG
Sbjct: 65  KDPKRLFEG 73


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score =  113 bits (272), Expect = 3e-26
 Identities = 52/69 (75%), Positives = 58/69 (84%)
 Frame = +1

Query: 472 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 651
           P   SKTY  PRRPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+E
Sbjct: 5   PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64

Query: 652 KDPKRLFEG 678
           KDPKRLFEG
Sbjct: 65  KDPKRLFEG 73


>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 602

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/41 (31%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = +2

Query: 668 CS-KVLKPIISSMDTANYHAIVASQDFVSWYAWRHSHRFSN 787
           CS K+L+ +I ++++ + HA+  S+  V  +A++   +FSN
Sbjct: 423 CSEKLLRTLIQTVNSNSDHALAVSKSEVPLFAYKILQKFSN 463


>SPBC18E5.13 ||SPBC23G7.03|translation initiation factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 156 YRNY*HQTLFITFPLSLTSVFQQ 88
           Y  + H+ LFI F  SLTSVF++
Sbjct: 4   YLQFPHRKLFIQFSYSLTSVFRK 26


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 133 VIYHFSTKFNISISAKNKIIFTSH 62
           ++Y+F   F+ + S K +II +SH
Sbjct: 11  IVYYFIISFSYAFSIKQEIIVSSH 34


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -1

Query: 121 FSTKFNISISAKNKIIFTSHALLADKN 41
           FS K NIS+S   K I  S ALL   N
Sbjct: 556 FSKKINISLSGVQKDIVRSDALLKFSN 582


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 483 KYRRYSVVHHLGELNYG 433
           +YR + V+ H G LNYG
Sbjct: 795 RYRLFGVIVHSGTLNYG 811


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,169,825
Number of Sequences: 5004
Number of extensions: 62871
Number of successful extensions: 154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)