Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3o12
         (805 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192    102   3e-22
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296...   102   3e-22
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511    101   7e-22
03_03_0147 + 14838707-14838734,14839316-14839430,14839464-148396...    74   2e-13
07_03_1358 - 25984897-25984997,25985623-25985650                       47   2e-05
01_06_0939 - 33188620-33189252,33189570-33189680,33190460-331906...    28   7.6  

>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
          Length = 195

 Score =  102 bits (245), Expect = 3e-22
 Identities = 44/66 (66%), Positives = 56/66 (84%)
 Frame = +1

Query: 481 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 660
           + KT+  PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR  AR LLTL+EK+P
Sbjct: 10  YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNP 69

Query: 661 KRLFEG 678
           +R+FEG
Sbjct: 70  RRIFEG 75


>03_01_0382 +
           2961665-2961672,2962504-2962557,2962935-2963004,
           2963141-2963386,2967246-2967491,2968837-2968888,
           2969270-2969651,2970527-2970681,2971389-2971713,
           2975803-2975871,2976189-2976346,2976444-2976551,
           2976659-2977131
          Length = 781

 Score =  102 bits (245), Expect = 3e-22
 Identities = 44/66 (66%), Positives = 56/66 (84%)
 Frame = +1

Query: 481 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 660
           + KT+  PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR  AR LLTL+EK+P
Sbjct: 226 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNP 285

Query: 661 KRLFEG 678
           +R+FEG
Sbjct: 286 RRIFEG 291


>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
          Length = 218

 Score =  101 bits (242), Expect = 7e-22
 Identities = 44/64 (68%), Positives = 55/64 (85%)
 Frame = +1

Query: 487 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 666
           KT+  PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR  AR LLTL+EK+P+R
Sbjct: 35  KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNPRR 94

Query: 667 LFEG 678
           +FEG
Sbjct: 95  IFEG 98


>03_03_0147 +
           14838707-14838734,14839316-14839430,14839464-14839697,
           14840571-14840667
          Length = 157

 Score = 73.7 bits (173), Expect = 2e-13
 Identities = 39/79 (49%), Positives = 51/79 (64%)
 Frame = +1

Query: 481 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 660
           + KT+  PRRP+EK R D ELK+ GEYGLR+K E+WRV           +ELLTL+EK+P
Sbjct: 10  YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRV-----------QELLTLDEKNP 58

Query: 661 KRLFEGT*TNYFINGYSQL 717
           +R+FEG      +N Y  L
Sbjct: 59  RRIFEGEALLRHMNRYGLL 77


>07_03_1358 - 25984897-25984997,25985623-25985650
          Length = 42

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 18/28 (64%), Positives = 23/28 (82%)
 Frame = +1

Query: 481 FSKTYVTPRRPFEKARLDQELKIIGEYG 564
           + KT+  PRRP+EK RLD ELK++GEYG
Sbjct: 10  YGKTFKKPRRPYEKERLDAELKLVGEYG 37


>01_06_0939 -
           33188620-33189252,33189570-33189680,33190460-33190668,
           33190781-33191078
          Length = 416

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 535 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 657
           Q L+ I   G+ + +E++  + +L RIR   R  LT+E  D
Sbjct: 212 QRLQTIHLLGIDDNQEIFTTQTSLTRIRAVPRYSLTIESLD 252


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,499,718
Number of Sequences: 37544
Number of extensions: 373175
Number of successful extensions: 612
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)