Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3o12
         (805 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061396-1|AAL28944.1|  137|Drosophila melanogaster LD32106p pro...   145   7e-35
AE014296-1681|AAF50250.1|  137|Drosophila melanogaster CG3395-PB...   145   7e-35
AE014296-1680|AAN11946.1|  195|Drosophila melanogaster CG3395-PD...   145   7e-35
AE014296-1679|AAF50249.1|  195|Drosophila melanogaster CG3395-PA...   145   7e-35
X69677-1|CAB41492.1|  197|Drosophila melanogaster ribosomal prot...   124   2e-28

>AY061396-1|AAL28944.1|  137|Drosophila melanogaster LD32106p
           protein.
          Length = 137

 Score =  145 bits (351), Expect = 7e-35
 Identities = 67/75 (89%), Positives = 72/75 (96%)
 Frame = +1

Query: 454 MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 633
           MVN R+PSVFSKTYVTPRRP+EKARLDQELKIIGEYGLRNKREVWRVKY LA+IRKAARE
Sbjct: 1   MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE 60

Query: 634 LLTLEEKDPKRLFEG 678
           LLTL+EKD KRLF+G
Sbjct: 61  LLTLDEKDEKRLFQG 75


>AE014296-1681|AAF50250.1|  137|Drosophila melanogaster CG3395-PB,
           isoform B protein.
          Length = 137

 Score =  145 bits (351), Expect = 7e-35
 Identities = 67/75 (89%), Positives = 72/75 (96%)
 Frame = +1

Query: 454 MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 633
           MVN R+PSVFSKTYVTPRRP+EKARLDQELKIIGEYGLRNKREVWRVKY LA+IRKAARE
Sbjct: 1   MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE 60

Query: 634 LLTLEEKDPKRLFEG 678
           LLTL+EKD KRLF+G
Sbjct: 61  LLTLDEKDEKRLFQG 75


>AE014296-1680|AAN11946.1|  195|Drosophila melanogaster CG3395-PD,
           isoform D protein.
          Length = 195

 Score =  145 bits (351), Expect = 7e-35
 Identities = 67/75 (89%), Positives = 72/75 (96%)
 Frame = +1

Query: 454 MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 633
           MVN R+PSVFSKTYVTPRRP+EKARLDQELKIIGEYGLRNKREVWRVKY LA+IRKAARE
Sbjct: 1   MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE 60

Query: 634 LLTLEEKDPKRLFEG 678
           LLTL+EKD KRLF+G
Sbjct: 61  LLTLDEKDEKRLFQG 75


>AE014296-1679|AAF50249.1|  195|Drosophila melanogaster CG3395-PA,
           isoform A protein.
          Length = 195

 Score =  145 bits (351), Expect = 7e-35
 Identities = 67/75 (89%), Positives = 72/75 (96%)
 Frame = +1

Query: 454 MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 633
           MVN R+PSVFSKTYVTPRRP+EKARLDQELKIIGEYGLRNKREVWRVKY LA+IRKAARE
Sbjct: 1   MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE 60

Query: 634 LLTLEEKDPKRLFEG 678
           LLTL+EKD KRLF+G
Sbjct: 61  LLTLDEKDEKRLFQG 75


>X69677-1|CAB41492.1|  197|Drosophila melanogaster ribosomal protein
           protein.
          Length = 197

 Score =  124 bits (298), Expect = 2e-28
 Identities = 60/75 (80%), Positives = 66/75 (88%)
 Frame = +1

Query: 454 MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 633
           MVN R+PSVFSKTYVTPRRP+EKARLDQELKIIGEYGL+  R V  VKY LA+IRK ARE
Sbjct: 1   MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLQQARSV-AVKYALAKIRKVARE 59

Query: 634 LLTLEEKDPKRLFEG 678
           LLTL+EKD KRLF+G
Sbjct: 60  LLTLDEKDAKRLFQG 74


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,889,044
Number of Sequences: 53049
Number of extensions: 651848
Number of successful extensions: 1271
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1270
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3757402116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)