Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3o08
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...   101   9e-23
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    27   3.1  
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ...    26   5.5  
SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr ...    25   7.2  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    25   9.5  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score =  101 bits (242), Expect = 9e-23
 Identities = 47/87 (54%), Positives = 66/87 (75%)
 Frame = +3

Query: 381 QNYTFQTEVNRMMKLIINSLYRNKEIFLRELISNGSDALDKIRLMSLTDRGVLEANPELS 560
           + + F+ E++++M LIIN++Y NKEIFLRELISN SDALDKIR  SL+D   L+A  +L 
Sbjct: 5   ETFKFEAEISQLMSLIINTVYSNKEIFLRELISNASDALDKIRYQSLSDPHALDAEKDLF 64

Query: 561 IRIKAEPDKRLLHIIDSGVGMTRADLI 641
           IRI  + + ++L I D+G+GMT+ DLI
Sbjct: 65  IRITPDKENKILSIRDTGIGMTKNDLI 91


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -3

Query: 205 PESSRTPSPKSQICFIAGVKNIQRDLDVNYSILNNCRKC*LTQVPSFN 62
           P ++   SP S+   +AG  N+Q  +D+ +   NN +K  +T V + N
Sbjct: 311 PRNTLIFSPNSRYILLAGFGNLQGSIDI-FDAANNMKK--ITTVEAAN 355


>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
 Frame = -1

Query: 528 GPSATSDGSC--PTHLN---RSRSTRGGRSLY 448
           GPS TSDG C    +LN   R+ ST  G S++
Sbjct: 417 GPSGTSDGLCELQAYLNSPIRANSTSNGISIF 448


>SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +3

Query: 453 EIF--LRELISNGSDALDKIRLMSLTDRGVLEANPELSIRIK 572
           E+F  + E +SNGS  L +  L   +D  +LE++ ++   IK
Sbjct: 121 EVFSVIMEHLSNGSPVLSEEPLKGASDTQILESDSQIVAMIK 162


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -2

Query: 485  TVRDQLAEEDLFISVERVDDELHHAVDFRLERVVLRAV 372
            T+   L+ + L I+  R+ DE++  +D R ERVV R +
Sbjct: 964  TIMYLLSLQGLAIAPFRIVDEINQGMDPRNERVVHRHI 1001


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,062,527
Number of Sequences: 5004
Number of extensions: 35462
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)