Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3o08
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)                      182   2e-46
SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)                    58   8e-09
SB_42397| Best HMM Match : rve (HMM E-Value=0.0007)                    28   5.8  
SB_7198| Best HMM Match : rve (HMM E-Value=3.5e-14)                    28   5.8  
SB_6059| Best HMM Match : 7tm_2 (HMM E-Value=6.5e-09)                  28   7.6  
SB_23587| Best HMM Match : ERp29 (HMM E-Value=1.6e-06)                 28   7.6  

>SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 855

 Score =  182 bits (443), Expect = 2e-46
 Identities = 88/126 (69%), Positives = 105/126 (83%)
 Frame = +3

Query: 267 GSSREGSRTDAEAVLREEEAISPDALSVAQMKELRDRAQNYTFQTEVNRMMKLIINSLYR 446
           G SR+ SRTD EAV REEEAI  D L+VAQMKELRD+A+ + FQ EVNRMMKLIINSLYR
Sbjct: 39  GKSRDASRTDDEAVQREEEAIKLDGLNVAQMKELRDKAEKHEFQAEVNRMMKLIINSLYR 98

Query: 447 NKEIFLRELISNGSDALDKIRLMSLTDRGVLEANPELSIRIKAEPDKRLLHIIDSGVGMT 626
           NKEIFLRELISN SDALDKIRLMSLTD+   ++  ELSI+IKA+ +  +LH+ D+G+GMT
Sbjct: 99  NKEIFLRELISNSSDALDKIRLMSLTDKTAFDSGDELSIKIKADKENNILHVTDTGIGMT 158

Query: 627 RADLIK 644
           + +LIK
Sbjct: 159 KEELIK 164


>SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)
          Length = 739

 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
 Frame = +3

Query: 402 EVNRMMKLIINSLYRN-KEIFLRELISNGSDALDKIRLMSLTDRGVLEANPELSIRIKAE 578
           +V   ++L+++S      ++F+RE+ISN SDAL+K+R   LT + V E    L I I+ +
Sbjct: 66  DVEEPLELLMSSQKTKLSQVFIREVISNASDALEKVRHFFLTGKDVSETETSLEIMIETD 125

Query: 579 PDKRLLHIIDSGVGMTRADLI 641
            +     I D+GVGMT  +L+
Sbjct: 126 QEAGTFTIQDNGVGMTEEELM 146


>SB_42397| Best HMM Match : rve (HMM E-Value=0.0007)
          Length = 729

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 270 SSREGSRTDAEAVLREEEAISPDALSVAQMKELRDRAQ 383
           +SR  S+++ E       A  PDA  +AQM  +RD AQ
Sbjct: 418 TSRHPSQSNTEEKAPLCSASPPDAAEIAQMTAIRDTAQ 455


>SB_7198| Best HMM Match : rve (HMM E-Value=3.5e-14)
          Length = 865

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 270 SSREGSRTDAEAVLREEEAISPDALSVAQMKELRDRAQ 383
           +SR  S+++ E       A  PDA  +AQM  +RD AQ
Sbjct: 420 TSRHPSQSNTEEKAPLCSASPPDAAEIAQMTAIRDTAQ 457


>SB_6059| Best HMM Match : 7tm_2 (HMM E-Value=6.5e-09)
          Length = 1069

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -3

Query: 607 SMMCSSRLSGSALMRMLSSGFASSTPRSVS 518
           S+ C   L  + L  M  SGF SS PRS S
Sbjct: 535 SIRCEENLVYNPLTEMCESGFLSSPPRSSS 564


>SB_23587| Best HMM Match : ERp29 (HMM E-Value=1.6e-06)
          Length = 83

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +3

Query: 315 EEEAISPDALSVAQMKELRDRAQNYTFQTEVNRMMKLIINSLYRNKE 455
           +E+  S   + V  MK+++++   Y   TE+ R+ KL+ + L  NK+
Sbjct: 15  DEKGKSSGDMYVKIMKKIQEKGTGY-IDTEITRVKKLLKDKLTENKK 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,609,190
Number of Sequences: 59808
Number of extensions: 268912
Number of successful extensions: 753
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)