Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3o08
(654 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68751-3|CAA92973.1| 760|Caenorhabditis elegans Hypothetical pr... 157 8e-39
Z75530-3|CAA99793.1| 702|Caenorhabditis elegans Hypothetical pr... 101 3e-22
U00036-14|ABC71802.1| 672|Caenorhabditis elegans Hypothetical p... 77 1e-14
U00036-13|ABC71803.1| 479|Caenorhabditis elegans Hypothetical p... 77 1e-14
AF143150-1|AAD37916.1| 222|Caenorhabditis elegans heat shock pr... 77 1e-14
AL023828-7|CAA19452.1| 881|Caenorhabditis elegans Hypothetical ... 33 0.18
U29381-3|AAA68758.2| 617|Caenorhabditis elegans Hypothetical pr... 29 3.8
X70830-1|CAA50178.1| 534|Caenorhabditis elegans Cytoplasmic int... 28 5.0
U49831-7|AAA93408.1| 558|Caenorhabditis elegans Intermediate fi... 28 5.0
U49831-6|AAA93407.1| 589|Caenorhabditis elegans Intermediate fi... 28 5.0
Z46240-2|CAA86311.1| 213|Caenorhabditis elegans Hypothetical pr... 27 8.8
>Z68751-3|CAA92973.1| 760|Caenorhabditis elegans Hypothetical
protein T05E11.3 protein.
Length = 760
Score = 157 bits (380), Expect = 8e-39
Identities = 78/121 (64%), Positives = 95/121 (78%)
Frame = +3
Query: 279 EGSRTDAEAVLREEEAISPDALSVAQMKELRDRAQNYTFQTEVNRMMKLIINSLYRNKEI 458
E + + + REE++I D LSV+Q+KELR +A+ + FQ EVNRMMKLIINSLYRNKEI
Sbjct: 28 EDAPKETKEETREEDSIKLDGLSVSQIKELRSKAEKHEFQAEVNRMMKLIINSLYRNKEI 87
Query: 459 FLRELISNGSDALDKIRLMSLTDRGVLEANPELSIRIKAEPDKRLLHIIDSGVGMTRADL 638
FLRELISN SDALDKIRL+SLTD L E+S++IKA+ + RLLHI D+GVGMTR DL
Sbjct: 88 FLRELISNASDALDKIRLLSLTDPEQLRETEEMSVKIKADRENRLLHITDTGVGMTRQDL 147
Query: 639 I 641
I
Sbjct: 148 I 148
>Z75530-3|CAA99793.1| 702|Caenorhabditis elegans Hypothetical
protein C47E8.5 protein.
Length = 702
Score = 101 bits (243), Expect = 3e-22
Identities = 46/92 (50%), Positives = 67/92 (72%)
Frame = +3
Query: 366 LRDRAQNYTFQTEVNRMMKLIINSLYRNKEIFLRELISNGSDALDKIRLMSLTDRGVLEA 545
+ + A+ + FQ E+ ++M LIIN+ Y NKEI+LRELISN SDALDKIR +LT+ L+
Sbjct: 1 MSENAETFAFQAEIAQLMSLIINTFYSNKEIYLRELISNASDALDKIRYQALTEPSELDT 60
Query: 546 NPELSIRIKAEPDKRLLHIIDSGVGMTRADLI 641
EL I+I +++ L I+D+G+GMT+ADL+
Sbjct: 61 GKELFIKITPNKEEKTLTIMDTGIGMTKADLV 92
>U00036-14|ABC71802.1| 672|Caenorhabditis elegans Hypothetical
protein R151.7a protein.
Length = 672
Score = 77.0 bits (181), Expect = 1e-14
Identities = 40/97 (41%), Positives = 56/97 (57%)
Frame = +3
Query: 354 QMKELRDRAQNYTFQTEVNRMMKLIINSLYRNKEIFLRELISNGSDALDKIRLMSLTDRG 533
Q + + Q + FQ E +M ++ SLY + E+F+RELISN SDAL+K R L +G
Sbjct: 34 QRRWMASEPQRHEFQAETRNLMDIVAKSLYSHSEVFVRELISNASDALEKRRYAEL--KG 91
Query: 534 VLEANPELSIRIKAEPDKRLLHIIDSGVGMTRADLIK 644
+ P IRI DKR + D+G+GM R DL+K
Sbjct: 92 DVAEGPS-EIRITTNKDKRTITFEDTGIGMNREDLVK 127
>U00036-13|ABC71803.1| 479|Caenorhabditis elegans Hypothetical
protein R151.7b protein.
Length = 479
Score = 77.0 bits (181), Expect = 1e-14
Identities = 40/97 (41%), Positives = 56/97 (57%)
Frame = +3
Query: 354 QMKELRDRAQNYTFQTEVNRMMKLIINSLYRNKEIFLRELISNGSDALDKIRLMSLTDRG 533
Q + + Q + FQ E +M ++ SLY + E+F+RELISN SDAL+K R L +G
Sbjct: 34 QRRWMASEPQRHEFQAETRNLMDIVAKSLYSHSEVFVRELISNASDALEKRRYAEL--KG 91
Query: 534 VLEANPELSIRIKAEPDKRLLHIIDSGVGMTRADLIK 644
+ P IRI DKR + D+G+GM R DL+K
Sbjct: 92 DVAEGPS-EIRITTNKDKRTITFEDTGIGMNREDLVK 127
>AF143150-1|AAD37916.1| 222|Caenorhabditis elegans heat shock
protein 75 protein.
Length = 222
Score = 77.0 bits (181), Expect = 1e-14
Identities = 40/97 (41%), Positives = 56/97 (57%)
Frame = +3
Query: 354 QMKELRDRAQNYTFQTEVNRMMKLIINSLYRNKEIFLRELISNGSDALDKIRLMSLTDRG 533
Q + + Q + FQ E +M ++ SLY + E+F+RELISN SDAL+K R L +G
Sbjct: 34 QRRWMASEPQRHEFQAETRNLMDIVAKSLYSHSEVFVRELISNASDALEKRRYAEL--KG 91
Query: 534 VLEANPELSIRIKAEPDKRLLHIIDSGVGMTRADLIK 644
+ P IRI DKR + D+G+GM R DL+K
Sbjct: 92 DVAEGPS-EIRITTNKDKRTITFEDTGIGMNREDLVK 127
>AL023828-7|CAA19452.1| 881|Caenorhabditis elegans Hypothetical
protein Y17G7B.5a protein.
Length = 881
Score = 33.1 bits (72), Expect = 0.18
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 3/117 (2%)
Frame = +3
Query: 267 GSSREGSRTDAEAVLREEEAISPDALSVAQMKELRDRAQNYTFQTEVNRMMKLIINSLYR 446
G G D ++V EEE I D L + + +RD + E+ R K + S +
Sbjct: 122 GRRGRGDAADDDSVPMEEEDIPVDILENIRGRTIRDHVSDEAVAKEIERRFKNFLRSFHE 181
Query: 447 --NKEI-FLRELISNGSDALDKIRLMSLTDRGVLEANPELSIRIKAEPDKRLLHIID 608
NK+ +++ + S +D + + +S TD +S + P++ +L I+D
Sbjct: 182 PGNKQTKYIQMIKSMAADNRESLE-VSFTDLSDDNGEQNISYFLPEAPNE-MLAIMD 236
>U29381-3|AAA68758.2| 617|Caenorhabditis elegans Hypothetical
protein F35D11.3 protein.
Length = 617
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 318 EEAISPDALSVAQMKELRDRAQNYTFQTEVNRMMKL 425
E SPD V Q + LR + YT + E N +M+L
Sbjct: 316 ESDTSPDQAFVHQWRHLRHTKEQYTLRYESNYLMEL 351
>X70830-1|CAA50178.1| 534|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 534
Score = 28.3 bits (60), Expect = 5.0
Identities = 26/86 (30%), Positives = 39/86 (45%)
Frame = -2
Query: 566 ADAELRVRFQHAAVRQRHQTDLVQRI*TVRDQLAEEDLFISVERVDDELHHAVDFRLERV 387
ADA+ V A +Q TD +R+ T + E+L + +DDE +DF+ +
Sbjct: 161 ADAQSEVEMLRARFKQL--TDEEKRV-TADNSRIWEELQKARSDLDDETIGRIDFQNQVQ 217
Query: 386 VLRAVAQLLHLRHAQRVRGDGLLLAQ 309
L + L H Q V+ LLAQ
Sbjct: 218 TLMEELEFLRRVHEQEVKELQALLAQ 243
>U49831-7|AAA93408.1| 558|Caenorhabditis elegans Intermediate
filament, b protein1, isoform a protein.
Length = 558
Score = 28.3 bits (60), Expect = 5.0
Identities = 26/86 (30%), Positives = 39/86 (45%)
Frame = -2
Query: 566 ADAELRVRFQHAAVRQRHQTDLVQRI*TVRDQLAEEDLFISVERVDDELHHAVDFRLERV 387
ADA+ V A +Q TD +R+ T + E+L + +DDE +DF+ +
Sbjct: 161 ADAQSEVEMLRARFKQL--TDEEKRV-TADNSRIWEELQKARSDLDDETIGRIDFQNQVQ 217
Query: 386 VLRAVAQLLHLRHAQRVRGDGLLLAQ 309
L + L H Q V+ LLAQ
Sbjct: 218 TLMEELEFLRRVHEQEVKELQALLAQ 243
>U49831-6|AAA93407.1| 589|Caenorhabditis elegans Intermediate
filament, b protein1, isoform b protein.
Length = 589
Score = 28.3 bits (60), Expect = 5.0
Identities = 26/86 (30%), Positives = 39/86 (45%)
Frame = -2
Query: 566 ADAELRVRFQHAAVRQRHQTDLVQRI*TVRDQLAEEDLFISVERVDDELHHAVDFRLERV 387
ADA+ V A +Q TD +R+ T + E+L + +DDE +DF+ +
Sbjct: 192 ADAQSEVEMLRARFKQL--TDEEKRV-TADNSRIWEELQKARSDLDDETIGRIDFQNQVQ 248
Query: 386 VLRAVAQLLHLRHAQRVRGDGLLLAQ 309
L + L H Q V+ LLAQ
Sbjct: 249 TLMEELEFLRRVHEQEVKELQALLAQ 274
>Z46240-2|CAA86311.1| 213|Caenorhabditis elegans Hypothetical
protein B0272.2 protein.
Length = 213
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 420 KLIINSLYRNKEIFLRELISNGSDALDKIRLMSLTDRGV 536
+L++N ++ L +LIS GS L+ ++ L RGV
Sbjct: 123 ELLLNDRLQSSHTHLDDLISQGSAVLENLKSQHLNLRGV 161
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,573,338
Number of Sequences: 27780
Number of extensions: 206052
Number of successful extensions: 602
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -