Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3o07
(683 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bomb... 483 e-135
UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|R... 141 1e-32
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 135 1e-30
UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimu... 135 1e-30
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 133 3e-30
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 132 1e-29
UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11; Tymovi... 128 9e-29
UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2; Tymovir... 124 2e-27
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 122 6e-27
UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly... 116 4e-25
UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8; Tymovir... 116 7e-25
UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|... 113 3e-24
UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3; Tymovir... 111 2e-23
UniRef50_UPI0000D55A56 Cluster: PREDICTED: similar to CG3060-PA;... 35 2.1
UniRef50_A6R1Z6 Cluster: Putative uncharacterized protein; n=1; ... 33 4.9
UniRef50_Q2GE03 Cluster: Peptide chain release factor 1; n=26; B... 33 6.5
UniRef50_Q4KE09 Cluster: Transporter, LysE family; n=6; Pseudomo... 33 8.6
UniRef50_A0E7C9 Cluster: Chromosome undetermined scaffold_81, wh... 33 8.6
>UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bombyx
mori Macula-like latent virus|Rep: RNA-dependent RNA
polymerase - Bombyx mori Macula-like latent virus
Length = 1747
Score = 483 bits (1190), Expect = e-135
Identities = 225/227 (99%), Positives = 225/227 (99%)
Frame = +2
Query: 2 SVTLLESFVSVHSLLITRVPQPPXSGEXVFLTPPASLLPNPEGLELPIKSRLVPTEVYNS 181
SVTLLESFVSVHSLLITRVPQPP SGE VFLTPPASLLPNPEGLELPIKSRLVPTEVYNS
Sbjct: 232 SVTLLESFVSVHSLLITRVPQPPPSGEHVFLTPPASLLPNPEGLELPIKSRLVPTEVYNS 291
Query: 182 LFTYVRAVRTLRVTDPSGFVRTQRQKPEHSWVQSSAWDNLANFALLTCSARPSLEYGFCY 361
LFTYVRAVRTLRVTDPSGFVRTQRQKPEHSWVQSSAWDNLANFALLTCSARPSLEYGFCY
Sbjct: 292 LFTYVRAVRTLRVTDPSGFVRTQRQKPEHSWVQSSAWDNLANFALLTCSARPSLEYGFCY 351
Query: 362 SSYKLLSLWIVRTLRSISAYHTGSLLTIPILHHLSPYQLCYRTHTFRWLPTHLDFHKTLP 541
SSYKLLSLWIVRTLRSISAYHTGSLLTIPILHHLSPYQLCYRTHTFRWLPTHLDFHKTLP
Sbjct: 352 SSYKLLSLWIVRTLRSISAYHTGSLLTIPILHHLSPYQLCYRTHTFRWLPTHLDFHKTLP 411
Query: 542 SLIHRAFASITGRYITNSPEFPTSTFSINHLLQPFGKSLQKFPCHSL 682
SLIHRAFASITGRYITNSPEFPTSTFSINHLLQPFGKSLQKFPCHSL
Sbjct: 412 SLIHRAFASITGRYITNSPEFPTSTFSINHLLQPFGKSLQKFPCHSL 458
>UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|Rep:
Replicase - Grapevine fleck virus
Length = 1949
Score = 141 bits (342), Expect = 1e-32
Identities = 83/187 (44%), Positives = 110/187 (58%), Gaps = 2/187 (1%)
Frame = +2
Query: 2 SVTLLESFVSVHSLLITRVPQPPXSGEXVFL--TPPASLLPNPEGLELPIKSRLVPTEVY 175
+VT+LES+ SVHS+LITR +P + +P A LLPNP ++P++SRLVP +V
Sbjct: 354 TVTVLESWFSVHSILITRGVRPLELPRDIISLPSPDAVLLPNPSAFDIPLRSRLVPRDVC 413
Query: 176 NSLFTYVRAVRTLRVTDPSGFVRTQRQKPEHSWVQSSAWDNLANFALLTCSARPSLEYGF 355
SLF YVRAVRTLR TDP+GF+RTQ K E WV + AWD+LA FALLT RP+ +
Sbjct: 414 ESLFVYVRAVRTLRTTDPAGFIRTQSNKAEFDWVTAEAWDHLAQFALLTAPVRPNTYFLP 473
Query: 356 CYSSYKLLSLWIVRTLRSISAYHTGSLLTIPILHHLSPYQLCYRTHTFRWLPTHLDFHKT 535
S ++ W+ R R I A T +LL+ + RTH+ L T L H T
Sbjct: 474 LLSPLAVVRHWLFRKQRPIFA--TLTLLSASTAAAIPIAIARLRTHSVTQL-TILGHHFT 530
Query: 536 LPSLIHR 556
P ++ R
Sbjct: 531 PPKILAR 537
>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
Polyprotein - Maize rayado fino virus
Length = 2027
Score = 135 bits (326), Expect = 1e-30
Identities = 72/132 (54%), Positives = 87/132 (65%), Gaps = 2/132 (1%)
Frame = +2
Query: 2 SVTLLESFVSVHSLLITRVPQPPXSGEXV--FLTPPASLLPNPEGLELPIKSRLVPTEVY 175
SVTLL+SF VHSLLI R P E + F P A LP P L ++ RLVP +VY
Sbjct: 239 SVTLLDSFGPVHSLLIQRGRPPVFQAEDIASFRVPDAVALPAPASLHQDLRHRLVPRKVY 298
Query: 176 NSLFTYVRAVRTLRVTDPSGFVRTQRQKPEHSWVQSSAWDNLANFALLTCSARPSLEYGF 355
++LF YVRAVR LRVTDP+GFVRTQ KPE+SWV SSAWDNL +FAL T + RP+ +
Sbjct: 299 DALFNYVRAVR-LRVTDPAGFVRTQVGKPEYSWVTSSAWDNLQHFALQTAAVRPNTSHPL 357
Query: 356 CYSSYKLLSLWI 391
S + LS W+
Sbjct: 358 FQSPFARLSHWL 369
>UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimum
latent virus|Rep: RNA replicase polyprotein - Erysimum
latent virus (ELV)
Length = 1748
Score = 135 bits (326), Expect = 1e-30
Identities = 81/191 (42%), Positives = 108/191 (56%), Gaps = 7/191 (3%)
Frame = +2
Query: 2 SVTLLESFVSVHSLLITRVPQP--PXSGEXV----FLTPPASLLPNPEGLELPIKSRLVP 163
SV++LES+ +HSLLI R Q P S + F TP A +LPNP+ L +P++ RLVP
Sbjct: 232 SVSVLESWGPLHSLLIERSSQTQNPDSQKIKDLISFQTPQALILPNPDSLAVPLRHRLVP 291
Query: 164 TEVYNSLFTYVRAVRTLRVTDPSGFVRTQRQKPEHSWVQSSAWDNLANFALLTCSARPSL 343
+ Y++LFTY RA RTLR +DP+GFVRTQ KPE +WV S AWDNL +ALLT S RP +
Sbjct: 292 QKTYDALFTYTRATRTLRTSDPAGFVRTQSNKPEFNWVTSQAWDNLQTYALLTASYRPPV 351
Query: 344 EYGFCYSSYKLLSLWIVRTLRSISAYHTGSLLTIPILHHLSPYQL-CYRTHTFRWLPTHL 520
Y S L + R ++A LT+ I ++ + +F L HL
Sbjct: 352 SYTLHRSPLTKLKELLTRNALKLAAM-ASPALTLAIFTTMTALNTNSSKALSFSALKIHL 410
Query: 521 DFHKTLPSLIH 553
T P L+H
Sbjct: 411 LNPLTGPELLH 421
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 133 bits (322), Expect = 3e-30
Identities = 82/179 (45%), Positives = 104/179 (58%), Gaps = 4/179 (2%)
Frame = +2
Query: 2 SVTLLESFVSVHSLLITR-VPQPPXSGEXV-FLTPPASLLPNPEGLELPIKSRLVPTEVY 175
+VT L+S+ HSLLI R +P + V F P A LLP + P + RLVP VY
Sbjct: 232 TVTRLDSWGPCHSLLIQRGIPPAHVVNDFVSFDVPAAVLLPEATSIRQPTRHRLVPQSVY 291
Query: 176 NSLFTYVRAVRTLRVTDPSGFVRTQRQKPEHSWVQSSAWDNLANFALLTCSARPSLEYGF 355
N+LFTY RAVRTLR++DP GFVRTQ KPEH+WV SSAWDNL +F+LLT S RPS Y +
Sbjct: 292 NALFTYTRAVRTLRISDPVGFVRTQSNKPEHAWVTSSAWDNLQHFSLLTASNRPSNSYSW 351
Query: 356 CYSSYK--LLSLWIVRTLRSISAYHTGSLLTIPILHHLSPYQLCYRTHTFRWLPTHLDF 526
S ++ + L V SA T S+ T L L ++ R LP++L F
Sbjct: 352 NGSLWQRFISRLQTVAAELKSSAIFTSSITT--FLFSLLFQYFRRKSAASRSLPSNLGF 408
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 132 bits (318), Expect = 1e-29
Identities = 67/132 (50%), Positives = 88/132 (66%), Gaps = 2/132 (1%)
Frame = +2
Query: 2 SVTLLESFVSVHSLLITR-VPQPPXSGEXV-FLTPPASLLPNPEGLELPIKSRLVPTEVY 175
+V+ L+S+ HSLLI R +P + + F P A +P P L ++ RLVP +VY
Sbjct: 253 TVSRLDSWGPCHSLLIQRGIPPMHAEHDSISFRGPRAVAIPEPSSLHQDLRHRLVPEDVY 312
Query: 176 NSLFTYVRAVRTLRVTDPSGFVRTQRQKPEHSWVQSSAWDNLANFALLTCSARPSLEYGF 355
N+LF YVRAVRTLRVTDP+GFVRTQ KPE++WV SSAWDNLA+FALLT RP +
Sbjct: 313 NALFLYVRAVRTLRVTDPAGFVRTQCSKPEYAWVTSSAWDNLAHFALLTAPHRPRTSFYL 372
Query: 356 CYSSYKLLSLWI 391
S+++ L W+
Sbjct: 373 FSSTFQRLEHWV 384
>UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11;
Tymovirus|Rep: RNA replicase polyprotein - Ononis yellow
mosaic virus
Length = 1776
Score = 128 bits (310), Expect = 9e-29
Identities = 69/140 (49%), Positives = 90/140 (64%), Gaps = 3/140 (2%)
Frame = +2
Query: 2 SVTLLESFVSVHSLLITR-VPQPPXSGEXVFLTPPASLLPNPEG--LELPIKSRLVPTEV 172
SV+ LES+ VHSLLITR +P P S + + LP PE L P++ RLVPTEV
Sbjct: 232 SVSKLESWGPVHSLLITRGLPHLPSSEKQQVSFHIPNCLPLPEATFLHQPLRHRLVPTEV 291
Query: 173 YNSLFTYVRAVRTLRVTDPSGFVRTQRQKPEHSWVQSSAWDNLANFALLTCSARPSLEYG 352
Y++LFTY RAVRTLR +DP+GFVRT KP++SWV S AWDNL +ALL RP + +
Sbjct: 292 YDALFTYTRAVRTLRTSDPAGFVRTHSNKPQYSWVTSRAWDNLQTYALLNAPVRPVVLFD 351
Query: 353 FCYSSYKLLSLWIVRTLRSI 412
F S K L++ + + S+
Sbjct: 352 FFLSPLKKFQLFMSQHINSL 371
>UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2;
Tymovirus|Rep: RNA replicase polyprotein - Kennedya
yellow mosaic virus (strain Jervis bay) (KYMV)
Length = 1874
Score = 124 bits (299), Expect = 2e-27
Identities = 72/169 (42%), Positives = 94/169 (55%), Gaps = 18/169 (10%)
Frame = +2
Query: 2 SVTLLESFVSVHSLLITRVPQPPXSGEXVFLTPPASLLPNPE----------GLEL---- 139
S+T+LES+ +HS+LI R P V PP S P+PE +EL
Sbjct: 232 SITILESWGPLHSILIQRGLPLPDPKLLVRSLPPFSRSPDPETDLVSFQVPKSVELPQAT 291
Query: 140 ----PIKSRLVPTEVYNSLFTYVRAVRTLRVTDPSGFVRTQRQKPEHSWVQSSAWDNLAN 307
P++ RLVP VYN+LFTY RAVRTLRV+DP+GFVRTQ KPEH WV SAWDNL
Sbjct: 292 FLSQPLRHRLVPESVYNALFTYTRAVRTLRVSDPAGFVRTQSNKPEHKWVTPSAWDNLQT 351
Query: 308 FALLTCSARPSLEYGFCYSSYKLLSLWIVRTLRSISAYHTGSLLTIPIL 454
FALL C RP++ Y + + + L+ + R + L + +L
Sbjct: 352 FALLNCPLRPNVVYHVLLNPLQKMKLYFSQHWRRLGVIAAPGLFCLSLL 400
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 122 bits (295), Expect = 6e-27
Identities = 70/142 (49%), Positives = 85/142 (59%), Gaps = 4/142 (2%)
Frame = +2
Query: 2 SVTLLESFVSVHSLLITRVPQPPXSGEX---VFLTPPASLLPNPEGLELPIKSRLVPTEV 172
+++ L+S+ VHSLLI R +PP E F TP A LLP P L ++ RLVP +V
Sbjct: 320 TISRLDSWGPVHSLLIQR-GRPPIHLEEDSISFRTPKAVLLPEPASLSQGVRDRLVPADV 378
Query: 173 YNSLFTYVRAVRTLRVTDPSGFVRTQRQKPEHSWVQSSAWDNLANFALLTCSARPSLEYG 352
Y +LF YVRAVRTLRVTDP+GFVRTQ KPE+SWV S WDN AL T RP Y
Sbjct: 379 YQALFIYVRAVRTLRVTDPAGFVRTQISKPEYSWVTSFRWDNFPPLALATAPHRPHTTYF 438
Query: 353 FCYSSYKLLSLWI-VRTLRSIS 415
S+ +S W TL +S
Sbjct: 439 LFNSTAARVSHWFRTHTLALLS 460
>UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep:
Polyprotein - Grapevine rupestris vein feathering virus
Length = 2068
Score = 116 bits (280), Expect = 4e-25
Identities = 60/130 (46%), Positives = 82/130 (63%), Gaps = 1/130 (0%)
Frame = +2
Query: 2 SVTLLESFVSVHSLLITRVPQPPXSGEXVFLTPPASL-LPNPEGLELPIKSRLVPTEVYN 178
++T LES+ VHSLLITR + + +F + P ++ +P ++ ++ RLVP+ VY+
Sbjct: 363 AITRLESWGPVHSLLITRGRPLVLTDDSLFFSSPDAVEIPAASSIQQSLRHRLVPSAVYH 422
Query: 179 SLFTYVRAVRTLRVTDPSGFVRTQRQKPEHSWVQSSAWDNLANFALLTCSARPSLEYGFC 358
SLF YVRAVRTLR TDP G+VRTQ KPE++WV S+AWDNL +F T R Y
Sbjct: 423 SLFIYVRAVRTLRQTDPQGYVRTQSNKPEYAWVTSAAWDNLQHFVTETAHHRQRTTYYLF 482
Query: 359 YSSYKLLSLW 388
S+ LS W
Sbjct: 483 NSTLARLSHW 492
>UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8;
Tymovirus|Rep: RNA replicase polyprotein - Turnip yellow
mosaic virus
Length = 1844
Score = 116 bits (278), Expect = 7e-25
Identities = 72/178 (40%), Positives = 91/178 (51%), Gaps = 22/178 (12%)
Frame = +2
Query: 2 SVTLLESFVSVHSLLITRVPQPPXSGEXV----------------------FLTPPASLL 115
SVT+LES+ VHSLLI R PP F P A L
Sbjct: 232 SVTILESWGPVHSLLIQRGTPPPDPSLQAPPTLMTSDLFRSYQEPRLDVVSFRIPDAIEL 291
Query: 116 PNPEGLELPIKSRLVPTEVYNSLFTYVRAVRTLRVTDPSGFVRTQRQKPEHSWVQSSAWD 295
P L+ P++ RLVP VYN+LFTY RAVRTLR +DP+ FVR KP+H WV S+AWD
Sbjct: 292 PQATFLQQPLRDRLVPRAVYNALFTYTRAVRTLRTSDPAAFVRMHSSKPDHDWVTSNAWD 351
Query: 296 NLANFALLTCSARPSLEYGFCYSSYKLLSLWIVRTLRSISAYHTGSLLTIPILHHLSP 469
NL FALL RP++ Y S LSL++ + R ++A L + +L P
Sbjct: 352 NLQTFALLNVPLRPNVVYHVLQSPIASLSLYLRQHWRRLTATAVPILSFLTLLQRFLP 409
>UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle
virus|Rep: Replicase - Dulcamara mottle virus
Length = 1742
Score = 113 bits (273), Expect = 3e-24
Identities = 88/224 (39%), Positives = 117/224 (52%), Gaps = 31/224 (13%)
Frame = +2
Query: 2 SVTLLESFVSVHSLLITR----------VPQPPXSGEXVF----LTPPA-SLLPNPEGLE 136
SVT+L+S+ +HS+LI R P P S +F L P A + PE LE
Sbjct: 232 SVTILDSWGPLHSILIQRGLPSRHPAHVSPNIPSSNSDLFHRFQLVPTALASFRIPEALE 291
Query: 137 L--------PIKSRLVPTEVYNSLFTYVRAVRTLRVTDPSGFVRTQRQKPEHSWVQSSAW 292
L P++ RLVP +VYNSLFTY RAVRTLR +DP+GFVRTQ KP++SWV SAW
Sbjct: 292 LPSASFLNQPLRHRLVPVQVYNSLFTYTRAVRTLRTSDPAGFVRTQSNKPQYSWVTPSAW 351
Query: 293 DNLANFALLTCSARPSLEYGFCYSSYKLLSLWIVR---TLRSISAYHTGSLLTIP-ILHH 460
DNL FALL + R Y F + + + ++ + + S S +LL +P +L +
Sbjct: 352 DNLQTFALLNANVRQKTRYLFLDNPLQKILHYLKQHSMLIFSRSVPLMSALLVLPKLLGY 411
Query: 461 LSPY----QLCYRTHTFRWLPTHLDFHKTLPSLIHRAFASITGR 580
P L H+F P HL T+P L +AF I R
Sbjct: 412 RIPVPTISHLSIAGHSFIRKPPHL----TVPFLHLKAFPRILQR 451
>UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3;
Tymovirus|Rep: RNA replicase polyprotein - Eggplant
mosaic virus
Length = 1839
Score = 111 bits (267), Expect = 2e-23
Identities = 73/197 (37%), Positives = 98/197 (49%), Gaps = 5/197 (2%)
Frame = +2
Query: 62 QPPXSGEXVFLTPPASLLPNPEGLELPIKSRLVPTEVYNSLFTYVRAVRTLRVTDPSGFV 241
Q P F P LP L P++ RLVPT VYN+LFTY RAVRTLR +DP+GFV
Sbjct: 292 QQPQLSLVSFRIPDCVELPQATFLRQPLRHRLVPTSVYNALFTYTRAVRTLRTSDPAGFV 351
Query: 242 RTQRQKPEHSWVQSSAWDNLANFALLTCSARPSLEYGFCYSSYKLLSLWIVRTLR----S 409
RTQ KPEH+WV +AWDNL + + RP + Y F S L L + R +
Sbjct: 352 RTQSNKPEHAWVTPNAWDNLQTLS-VNAPHRPQVCYHFFSSPVARLKLHFAQHWRAYLLA 410
Query: 410 ISAYHTGSLLTIPILHHLSPYQLCYRTHTFRWLPTHLDFHKTLPSLIHRAFAS-ITGRYI 586
++ + T S L +P+ + +P+ L FR + P L+H S + G I
Sbjct: 411 LTPFLTTSPLLLPLFNFNTPFPLPRLLSLFR-------RSVSSPRLLHSILPSQLRGAAI 463
Query: 587 TNSPEFPTSTFSINHLL 637
N P P ++H L
Sbjct: 464 PNRP-LPLWVTKLHHFL 479
>UniRef50_UPI0000D55A56 Cluster: PREDICTED: similar to CG3060-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG3060-PA - Tribolium castaneum
Length = 759
Score = 34.7 bits (76), Expect = 2.1
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Frame = +2
Query: 98 PPASLLPN-PEGLELPIKSRLVPTEV--YNSLFTYVRAVRTLRVTDPSGFVRTQRQKPEH 268
P L P+ L+ I++RL+ V ++ L YV +R+LR+ DP G + +P H
Sbjct: 312 PKTDLKPHLTRSLQKAIETRLLHPGVSTFDVLTAYVATIRSLRILDPCGLLLETITQPVH 371
Query: 269 SWVQS 283
+++S
Sbjct: 372 QYLRS 376
>UniRef50_A6R1Z6 Cluster: Putative uncharacterized protein; n=1;
Ajellomyces capsulatus NAm1|Rep: Putative
uncharacterized protein - Ajellomyces capsulatus NAm1
Length = 656
Score = 33.5 bits (73), Expect = 4.9
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +2
Query: 134 ELPIKSRLVPTEVYNSLFTYVRAVRTLRVTDPSGFVRTQRQKPEHSWVQSSA--WDNLAN 307
++ KSR T + ++L YV R +PS F+ + + E WV +S WD A
Sbjct: 118 QMRTKSRAAVT-ILSALIAYVSINSLARALNPSAFIWYEEDREESDWVSTSHSWWDRKAC 176
Query: 308 FALLTCSA 331
L C A
Sbjct: 177 RWLSLCGA 184
>UniRef50_Q2GE03 Cluster: Peptide chain release factor 1; n=26;
Bacteria|Rep: Peptide chain release factor 1 -
Neorickettsia sennetsu (strain Miyayama)
Length = 367
Score = 33.1 bits (72), Expect = 6.5
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Frame = +2
Query: 47 ITRVPQPPXSGEXVFLTPPASLLPNPEGLELPIKSRLVPTEVYNSLFTYVRAVRT----L 214
+ RVP+ +G T ++LP PE +++ I + + +VY S ++V T +
Sbjct: 186 VQRVPETESAGRIHTSTATVAVLPEPEDVDVKINDKDLRIDVYRSSGPGGQSVNTTDSAV 245
Query: 215 RVTD-PSGFVRTQR-QKPEH 268
R+T P+G V Q+ +K +H
Sbjct: 246 RITHIPTGIVVIQQDEKSQH 265
>UniRef50_Q4KE09 Cluster: Transporter, LysE family; n=6;
Pseudomonas|Rep: Transporter, LysE family - Pseudomonas
fluorescens (strain Pf-5 / ATCC BAA-477)
Length = 264
Score = 32.7 bits (71), Expect = 8.6
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Frame = +2
Query: 116 PNPEGLELPIKSRLVPTEVYNSLFTYVRAVRTLRVTDPSGFVRTQRQKPEHSWVQSSAWD 295
P P+ ++ P +R V T +S+ TY V + + P +S+ W
Sbjct: 35 PGPDRIKPPFSARRVRTMDAHSILTYT-LVAAIAIASPGPATLVALHNSVAYGAKSTIWS 93
Query: 296 NLANFALLTC-SARPSLEYGFCYSSYKLLSLWIVRTLRSISA 418
+L N + L C SA L G +S S WI ++ I A
Sbjct: 94 SLGNVSGLFCMSAAAMLGLGALIAS----SEWIFNAVKIIGA 131
>UniRef50_A0E7C9 Cluster: Chromosome undetermined scaffold_81, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_81,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 188
Score = 32.7 bits (71), Expect = 8.6
Identities = 20/75 (26%), Positives = 36/75 (48%)
Frame = +2
Query: 254 QKPEHSWVQSSAWDNLANFALLTCSARPSLEYGFCYSSYKLLSLWIVRTLRSISAYHTGS 433
Q+P W Q S +N+ F LL A+ S+ Y KLL +++ + + Y + S
Sbjct: 102 QRPLLEWKQRSPKENVGKFKLLKKIAKYSMNLNSTYIRLKLLDKEVIKAI--LEQYLSKS 159
Query: 434 LLTIPILHHLSPYQL 478
+ ++ L+ +QL
Sbjct: 160 NYSTQYVYQLNKFQL 174
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 669,926,904
Number of Sequences: 1657284
Number of extensions: 13928983
Number of successful extensions: 36560
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 35178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36540
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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