Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3o07
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    29   0.47 
SPBC18E5.13 ||SPBC23G7.03|translation initiation factor |Schizos...    28   1.4  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    27   2.5  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    27   3.3  
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces...    27   3.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   7.7  

>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +2

Query: 338 SLEYGFCYSSYKLLSLWIVRTLRSISAYHTGSLLTIPILHHLSPYQLCYRTHT 496
           +LE  F  S  K L L  +  L +    +T SL  +P  HH + Y++   THT
Sbjct: 218 NLELAFMNSKRKKLELPSLPVLSTAGPSYTNSL-ALPPFHHHNNYKMFNTTHT 269


>SPBC18E5.13 ||SPBC23G7.03|translation initiation factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 250 LRPNESGRISDAKRANGSNISKQRIVHLSW 161
           LR N+S R+ +A+++   N ++ R V  SW
Sbjct: 120 LRENQSSRLREAEKSKHKNKTRTRYVLFSW 149


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
 Frame = +3

Query: 66  LPLPAXMYF*LLPLPCFLIRRDWNCR-SNHDSCQLRCTILCLLMFEPFARFASLILP 233
           +PL       LLPL C  + +    R S+H S  LR   LC L   P       I P
Sbjct: 717 IPLQISTNLRLLPLLCLALTKHTGFRRSSHISSDLRSIALCYLSTLPTPLLMRYIYP 773


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 74  SGEXVFLTPPASLLPNPEGLELPIKSRLVPTE 169
           SGE  +L   A +   PE   + +KS LVP E
Sbjct: 228 SGEVCYLKVKACVKDKPEWQPISLKSELVPNE 259


>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +2

Query: 14  LESFVSVHSLLITRVPQPPXSGEXVFLTPPA---SLLPNPEGLELP 142
           +E+F+ +++ L++ VP+P      VF TP     S LP+   LE P
Sbjct: 6   IENFIYLNNTLLSEVPEP----NSVFYTPKCFSNSKLPHQSDLEEP 47


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 357 QKPYSKEGRAEHVNRAKLARLSQAEDCTHE 268
           ++ YS +GR     R +LA + QA D  HE
Sbjct: 870 KEAYSVKGRLNQSQREELALVEQAYDNPHE 899


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,751,001
Number of Sequences: 5004
Number of extensions: 58423
Number of successful extensions: 183
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)