Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3o07
(683 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0042 - 334417-334431,334563-334688,334852-335136,335220-33... 30 2.0
10_08_0249 + 16172811-16172987,16174048-16174299,16174426-161745... 29 4.5
08_02_1063 + 24024030-24024506,24024803-24024856,24024965-240251... 29 4.5
02_04_0005 - 18843061-18843201,18843309-18843440,18844457-188453... 29 4.5
06_01_0454 - 3234331-3236299,3237254-3238074 28 6.0
01_06_1361 - 36663859-36663985,36664353-36664543,36664746-366650... 28 6.0
02_05_0400 + 28671562-28672219,28672365-28672441,28673679-286737... 28 7.9
>07_01_0042 -
334417-334431,334563-334688,334852-335136,335220-335368,
336239-336536,337030-337131,337245-337613,337973-338115,
338334-338518,339246-339475,339734-339821,340158-340253,
340397-340512,340604-340852,340950-341175,341411-341622
Length = 962
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/36 (30%), Positives = 24/36 (66%)
Frame = +2
Query: 128 GLELPIKSRLVPTEVYNSLFTYVRAVRTLRVTDPSG 235
G+E+ I++ L+ T Y++L+ + R++ + DP+G
Sbjct: 758 GIEICIRNHLLATSGYHTLYDWYRSMESEHFPDPTG 793
>10_08_0249 +
16172811-16172987,16174048-16174299,16174426-16174505,
16174616-16174701,16174799-16174904,16174987-16175143,
16175220-16175315,16175797-16175845,16175946-16176205,
16176327-16176499,16176692-16176812,16176923-16176975,
16177088-16177217,16177371-16177516,16177887-16178075,
16178317-16178549,16178784-16178932,16179042-16179104
Length = 839
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Frame = +2
Query: 518 LDFHKTLPSLIHRAFASITGRY---------ITNSPEFPTSTFSINHLLQPFGKSLQKFP 670
+DF K L H+AFA GR I N F S+++++ + F L+ +P
Sbjct: 109 IDFDKMLELEAHKAFAPTVGRILRIEKLAETIINDESFSASSWTLDSFTEIFVTKLKSYP 168
Query: 671 CH 676
H
Sbjct: 169 PH 170
>08_02_1063 +
24024030-24024506,24024803-24024856,24024965-24025118,
24025314-24025388,24025511-24025788,24026023-24026253,
24026522-24026620,24026740-24026889,24027830-24027976,
24028525-24028575,24028647-24028819,24029018-24029147,
24029361-24029458,24029655-24029892,24030634-24030837,
24031003-24031083,24031296-24031535
Length = 959
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = -2
Query: 610 SGELWGVGDVAASNASEGSVNQRGQGFVEVQMSGQPSKGMSSITQLI 470
+GE V +A + S GS+N G+ VEV+ G + MS I +L+
Sbjct: 445 TGEPMPVTKIAGTEVSAGSINLNGKITVEVRRPGGET-AMSDILRLV 490
>02_04_0005 -
18843061-18843201,18843309-18843440,18844457-18845315,
18845884-18845973,18846748-18846869,18846950-18847049,
18847151-18847205,18847275-18847365,18847453-18847572,
18847681-18847780,18847890-18848018,18848099-18848201,
18848670-18848743,18848848-18848933,18849297-18849358,
18849454-18849541,18849937-18850029
Length = 814
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 359 YSSYKLLSLWIVRTLRSISAYHTGSLLTIPILHHLSP 469
+ S +L++ W R +RS +HT L LHH SP
Sbjct: 426 FFSCRLMNPWSWRGVRSSVPFHTPCLYASIYLHHPSP 462
>06_01_0454 - 3234331-3236299,3237254-3238074
Length = 929
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 99 LPLPCFLIRRDWNCRSNHDSCQLRCTILCLLMFEP 203
L LPC R W SNH L+ LC ++F P
Sbjct: 812 LALPCSDTRGSWLTISNHGFRCLKFAFLCNVLFMP 846
>01_06_1361 -
36663859-36663985,36664353-36664543,36664746-36665009,
36665215-36665373,36665476-36665679,36665765-36665983,
36666191-36666322,36666406-36666523,36666670-36666854,
36667263-36667355,36667819-36668008,36668500-36668585,
36668671-36668847,36669141-36669320,36669423-36669623
Length = 841
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 500 RWLPTHLDFHKTLP-SLIHRAFASITGRYITNSPEFPTSTFSINHLLQPFGKSLQ 661
RW T+L FHKT P + + + GR +TN+ T + ++ FG L+
Sbjct: 68 RWNETYLHFHKTDPKQTYYLSMEYLQGRALTNAVGNLGITGAYAEAVKKFGYELE 122
>02_05_0400 +
28671562-28672219,28672365-28672441,28673679-28673730,
28673851-28674008
Length = 314
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +2
Query: 374 LLSLWIVRTLRSISAYHTGSLLTIPILHHLSPYQLCY 484
L L R +R I Y+T L HHL +Q CY
Sbjct: 124 LQDLAFARPIRGIPVYNTSRPLPFLQSHHLQHHQHCY 160
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,331,344
Number of Sequences: 37544
Number of extensions: 399028
Number of successful extensions: 1057
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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