Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3o07
(683 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z35598-3|CAA84655.3| 525|Caenorhabditis elegans Hypothetical pr... 29 2.3
U29381-9|AAA68749.2| 503|Caenorhabditis elegans Prion-like-(q/n... 29 4.1
U29381-4|AAM98023.1| 511|Caenorhabditis elegans Prion-like-(q/n... 29 4.1
AF016678-2|AAB66153.1| 432|Caenorhabditis elegans Hypothetical ... 28 5.4
Z78540-6|CAD30431.1| 887|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z78540-5|CAB01738.2| 793|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z72501-3|CAD30430.1| 887|Caenorhabditis elegans Hypothetical pr... 28 7.1
AL023816-2|CAA19431.1| 355|Caenorhabditis elegans Hypothetical ... 28 7.1
AJ133838-1|CAB44432.1| 793|Caenorhabditis elegans DYC-1 protein... 28 7.1
Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr... 27 9.4
AY428645-1|AAR27937.1| 892|Caenorhabditis elegans microsomal tr... 27 9.4
AF142441-1|AAF66614.1| 701|Caenorhabditis elegans H+/oligopepti... 27 9.4
AF045645-4|AAC02607.3| 892|Caenorhabditis elegans Defecation su... 27 9.4
AF003146-1|AAB54202.1| 701|Caenorhabditis elegans Oligopeptide ... 27 9.4
AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like prot... 27 9.4
>Z35598-3|CAA84655.3| 525|Caenorhabditis elegans Hypothetical
protein F10F2.5 protein.
Length = 525
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +2
Query: 125 EGLELPIKSRLVPTEVYNSLFTYVRAVRTLRVTD-PSGFVRTQRQKPEHSWVQSSAWDNL 301
EGLE+ +R P +Y + V+ L T P GFV R+ +W WD+
Sbjct: 340 EGLEVMSDARYAP--IYCE-----QIVKGLSYTKCPDGFVEYYRKNEGKTWCHKYVWDDT 392
Query: 302 ANF 310
AN+
Sbjct: 393 ANY 395
>U29381-9|AAA68749.2| 503|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 35,
isoform a protein.
Length = 503
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 65 PPXSGEXVFLTPPASLLPNPEGLELPIKS 151
PP S E ++P ASL P +G LPI+S
Sbjct: 452 PPASSEENVISPDASLEPINDGKFLPIRS 480
>U29381-4|AAM98023.1| 511|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 35,
isoform b protein.
Length = 511
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 65 PPXSGEXVFLTPPASLLPNPEGLELPIKS 151
PP S E ++P ASL P +G LPI+S
Sbjct: 460 PPASSEENVISPDASLEPINDGKFLPIRS 488
>AF016678-2|AAB66153.1| 432|Caenorhabditis elegans Hypothetical
protein K07E8.7 protein.
Length = 432
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +2
Query: 452 LHHLSPYQLCYRTHT-FRWL 508
+ HL+PY CYRT T RW+
Sbjct: 64 VRHLAPYWACYRTRTKGRWI 83
>Z78540-6|CAD30431.1| 887|Caenorhabditis elegans Hypothetical
protein C33G3.1b protein.
Length = 887
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 497 FRWLPTHLDFHKTLPSLIHRAFASITGRYITNSPEFPTSTFSINH 631
F LP+ + +TLPSL S R +T P P T ++ H
Sbjct: 308 FNTLPSQMPSTQTLPSLSENPGQSHIPRMMTMPPNMPYPTATLPH 352
>Z78540-5|CAB01738.2| 793|Caenorhabditis elegans Hypothetical
protein C33G3.1a protein.
Length = 793
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 497 FRWLPTHLDFHKTLPSLIHRAFASITGRYITNSPEFPTSTFSINH 631
F LP+ + +TLPSL S R +T P P T ++ H
Sbjct: 214 FNTLPSQMPSTQTLPSLSENPGQSHIPRMMTMPPNMPYPTATLPH 258
>Z72501-3|CAD30430.1| 887|Caenorhabditis elegans Hypothetical
protein C33G3.1b protein.
Length = 887
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 497 FRWLPTHLDFHKTLPSLIHRAFASITGRYITNSPEFPTSTFSINH 631
F LP+ + +TLPSL S R +T P P T ++ H
Sbjct: 308 FNTLPSQMPSTQTLPSLSENPGQSHIPRMMTMPPNMPYPTATLPH 352
>AL023816-2|CAA19431.1| 355|Caenorhabditis elegans Hypothetical
protein T05G11.3 protein.
Length = 355
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 177 ILCLLMFEPFARFASLILPDSLGRNVKNQNIHGYNLQ 287
+LC+L F F F ++P +L N N ++ Y +Q
Sbjct: 138 VLCMLPFWIFDYFQVTVIPATLPSNCANFSVDSYQVQ 174
>AJ133838-1|CAB44432.1| 793|Caenorhabditis elegans DYC-1 protein
protein.
Length = 793
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 497 FRWLPTHLDFHKTLPSLIHRAFASITGRYITNSPEFPTSTFSINH 631
F LP+ + +TLPSL S R +T P P T ++ H
Sbjct: 214 FNTLPSQMPSTQTLPSLSENPGQSHIPRMMTMPPNMPYPTATLPH 258
>Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical
protein T06E4.3b protein.
Length = 2514
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +2
Query: 560 FASITGRYITNSPEFPTSTFSINHLLQPFGKSL 658
F S+T + TN FP I H LQ GK L
Sbjct: 249 FNSLTAKKSTNHMTFPKLLNEIQHFLQDHGKVL 281
>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical
protein T06E4.3a protein.
Length = 2531
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +2
Query: 560 FASITGRYITNSPEFPTSTFSINHLLQPFGKSL 658
F S+T + TN FP I H LQ GK L
Sbjct: 249 FNSLTAKKSTNHMTFPKLLNEIQHFLQDHGKVL 281
>AY428645-1|AAR27937.1| 892|Caenorhabditis elegans microsomal
triglyceride transferprotein protein.
Length = 892
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 377 LSLWIVRTLRSISAYHTGSL-LTIPILHHLSP 469
+SLW R+ AY +GSL LT + HH P
Sbjct: 773 VSLWNQRSNAKAEAYTSGSLHLTASLYHHSEP 804
>AF142441-1|AAF66614.1| 701|Caenorhabditis elegans H+/oligopeptide
symporter OPT-3 protein.
Length = 701
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 417 LITPVLFSPSQFFTIFPLISCVIELIPLDG 506
LIT FSPS+ I+ L +C+ L PL G
Sbjct: 42 LITEHEFSPSKATFIYHLFTCIAYLTPLIG 71
>AF045645-4|AAC02607.3| 892|Caenorhabditis elegans Defecation
suppressor of clk-1protein 4 protein.
Length = 892
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 377 LSLWIVRTLRSISAYHTGSL-LTIPILHHLSP 469
+SLW R+ AY +GSL LT + HH P
Sbjct: 773 VSLWNQRSNAKAEAYTSGSLHLTASLYHHSEP 804
>AF003146-1|AAB54202.1| 701|Caenorhabditis elegans Oligopeptide
transporter protein 3 protein.
Length = 701
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 417 LITPVLFSPSQFFTIFPLISCVIELIPLDG 506
LIT FSPS+ I+ L +C+ L PL G
Sbjct: 42 LITEHEFSPSKATFIYHLFTCIAYLTPLIG 71
>AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like protein
protein.
Length = 2514
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +2
Query: 560 FASITGRYITNSPEFPTSTFSINHLLQPFGKSL 658
F S+T + TN FP I H LQ GK L
Sbjct: 249 FNSLTAKKSTNHMTFPKLLNEIQHFLQDHGKVL 281
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,216,947
Number of Sequences: 27780
Number of extensions: 326945
Number of successful extensions: 909
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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