Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3o07
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   1.6  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    24   1.6  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   2.1  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   4.7  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   8.3  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   8.3  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = -2

Query: 589 GDVAASNASEGSVNQRGQGFVEVQMSGQPSKGMSSITQLIRGKMVKNWDGEKRTG 425
           GD    N    SV +  +G+V      QP +G +  T  +   +V N  G+   G
Sbjct: 305 GDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQV---IVLNHPGQISNG 356


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = -2

Query: 589 GDVAASNASEGSVNQRGQGFVEVQMSGQPSKGMSSITQLIRGKMVKNWDGEKRTG 425
           GD    N    SV +  +G+V      QP +G +  T  +   +V N  G+   G
Sbjct: 16  GDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQV---IVLNHPGQISNG 67


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 502 MAAHSFGLPQNLALFDSQS 558
           M +H FG P+ ++ FD QS
Sbjct: 333 MLSHPFGTPRIMSSFDFQS 351


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 248 QRQKPEHSWVQSSAWDNLAN 307
           +RQ  E+ W+ S+ +  +AN
Sbjct: 366 ERQNNEYIWIVSNKYQKIAN 385


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 499 KGMSSITQLIRGKMVKNW 446
           K M S+T +I+G   ++W
Sbjct: 6   KPMMSVTAIIQGTQAQHW 23


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 499 KGMSSITQLIRGKMVKNW 446
           K M S+T +I+G   ++W
Sbjct: 6   KPMMSVTAIIQGTQAQHW 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,991
Number of Sequences: 438
Number of extensions: 3837
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)