Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3o02
         (688 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of act...    75   4e-16
AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity mod...    75   4e-16
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    24   1.0  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    24   1.0  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    24   1.0  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    23   2.3  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    23   2.3  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    22   4.1  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.4  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.4  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.4  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.4  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.4  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    22   5.4  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   9.5  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   9.5  

>AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of
           activity of ets genes protein.
          Length = 108

 Score = 75.4 bits (177), Expect = 4e-16
 Identities = 42/75 (56%), Positives = 49/75 (65%), Gaps = 7/75 (9%)
 Frame = +2

Query: 245 EDDLPLDPRSWCRADVGAW---VSRRGGLPE----RFPMNGKALCLMSRDMFASRVPNKG 403
           ED+LP DPR W R  V  W   V+++ GLPE    RF MNGKALCLMS  MF SRVP  G
Sbjct: 29  EDNLPKDPRQWTREHVAQWINLVTQQHGLPEVPSSRFLMNGKALCLMSLGMFLSRVPLGG 88

Query: 404 FELHQDFRRRLAKAL 448
             L++DF+ RL  AL
Sbjct: 89  KLLYKDFQLRLCAAL 103


>AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity
           modulator protein.
          Length = 108

 Score = 75.4 bits (177), Expect = 4e-16
 Identities = 42/75 (56%), Positives = 49/75 (65%), Gaps = 7/75 (9%)
 Frame = +2

Query: 245 EDDLPLDPRSWCRADVGAW---VSRRGGLPE----RFPMNGKALCLMSRDMFASRVPNKG 403
           ED+LP DPR W R  V  W   V+++ GLPE    RF MNGKALCLMS  MF SRVP  G
Sbjct: 29  EDNLPKDPRQWTREHVAQWINLVTQQHGLPEVPSSRFLMNGKALCLMSLGMFLSRVPLGG 88

Query: 404 FELHQDFRRRLAKAL 448
             L++DF+ RL  AL
Sbjct: 89  KLLYKDFQLRLCAAL 103


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = -2

Query: 405 NPLFGTLEANMS---LDIRHRAFPFIGKRSGRPPRRDTHAPTSARHQDRGSNG 256
           NP+  T E  +S   LD  +  FP I  ++   P + TH     RH +  ++G
Sbjct: 74  NPIINT-ETGLSYTNLDYGNSNFPPINHQNYNEPYQRTHENMLLRHHEEVADG 125


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = -2

Query: 405 NPLFGTLEANMS---LDIRHRAFPFIGKRSGRPPRRDTHAPTSARHQDRGSNG 256
           NP+  T E  +S   LD  +  FP I  ++   P + TH     RH +  ++G
Sbjct: 74  NPIINT-ETGLSYTNLDYGNSNFPPINHQNYNEPYQRTHENMLLRHHEEVADG 125


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = -2

Query: 405 NPLFGTLEANMS---LDIRHRAFPFIGKRSGRPPRRDTHAPTSARHQDRGSNG 256
           NP+  T E  +S   LD  +  FP I  ++   P + TH     RH +  ++G
Sbjct: 74  NPIINT-ETGLSYTNLDYGNSNFPPINHQNYNEPYQRTHENMLLRHHEEVADG 125


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/56 (19%), Positives = 28/56 (50%)
 Frame = +1

Query: 460 LHREDVQKLNPPECVSAVSS*CRRKRMWILAYTELILEAFIHNFRYSTILFFSYLS 627
           ++R+ +   +     + V   C + ++ I A+ ++   +F+    YS++L   Y+S
Sbjct: 243 INRQTLDTADVKTLTTVVEKECYKMKVTIDAFNDIFGWSFLLFTLYSSLLLLDYVS 298


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/56 (19%), Positives = 28/56 (50%)
 Frame = +1

Query: 460 LHREDVQKLNPPECVSAVSS*CRRKRMWILAYTELILEAFIHNFRYSTILFFSYLS 627
           ++R+ +   +     + V   C + ++ I A+ ++   +F+    YS++L   Y+S
Sbjct: 169 INRQTLDTADVKTLTTVVEKECYKMKVTIDAFNDIFGWSFLLFTLYSSLLLLDYVS 224


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 488 IHQNAFPRYHLNVDGSEC 541
           +HQN++  YHL    + C
Sbjct: 79  MHQNSYTGYHLGSYAANC 96


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 6/22 (27%), Positives = 15/22 (68%)
 Frame = +3

Query: 54  NCDLKFSGFSFKGSVLTAICST 119
           +CD+KF  +++ G+ L  + ++
Sbjct: 141 HCDMKFGSWTYDGNQLDLVLNS 162


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 6/22 (27%), Positives = 15/22 (68%)
 Frame = +3

Query: 54  NCDLKFSGFSFKGSVLTAICST 119
           +CD+KF  +++ G+ L  + ++
Sbjct: 141 HCDMKFGSWTYDGNQLDLVLNS 162


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 6/22 (27%), Positives = 15/22 (68%)
 Frame = +3

Query: 54  NCDLKFSGFSFKGSVLTAICST 119
           +CD+KF  +++ G+ L  + ++
Sbjct: 141 HCDMKFGSWTYDGNQLDLVLNS 162


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 6/22 (27%), Positives = 15/22 (68%)
 Frame = +3

Query: 54  NCDLKFSGFSFKGSVLTAICST 119
           +CD+KF  +++ G+ L  + ++
Sbjct: 141 HCDMKFGSWTYDGNQLDLVLNS 162


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 6/22 (27%), Positives = 15/22 (68%)
 Frame = +3

Query: 54  NCDLKFSGFSFKGSVLTAICST 119
           +CD+KF  +++ G+ L  + ++
Sbjct: 141 HCDMKFGSWTYDGNQLDLVLNS 162


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 489 STRMRFRGIILMSTEANVDTSLY 557
           ST+   R I ++  E+ VDTS+Y
Sbjct: 262 STQSLSRWIKMVLAESGVDTSIY 284


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 10/37 (27%), Positives = 15/37 (40%)
 Frame = -2

Query: 333 KRSGRPPRRDTHAPTSARHQDRGSNGRSSSCNTLKSR 223
           +R   PP+   H P    + D G N + +     K R
Sbjct: 218 RRDTAPPQWYQHQPLLFTYTDDGKNQQRTGTELTKMR 254


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 491 GFSFWTSSR*SPVAPELWPVSFGSPDAVQILCLEPSKRTCP 369
           G + +TSS+    +P+L P+S   P   +    E +++T P
Sbjct: 463 GTNIYTSSKRQRTSPQLSPMSSLPPYPNRTQITEVTQQTEP 503


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,905
Number of Sequences: 336
Number of extensions: 3344
Number of successful extensions: 18
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)