Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3o02
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0088 - 9037516-9037997,9038171-9038513,9039512-9039787 31 0.86
04_01_0580 - 7539208-7539328,7539409-7539579,7539658-7540024,754... 30 1.5
02_04_0332 + 22093387-22093550,22093753-22094056 30 1.5
11_03_0217 - 11828305-11828343,11828449-11828487,11828573-118288... 29 4.6
05_07_0317 - 29193940-29193978,29194208-29194496,29194579-291947... 29 4.6
12_01_0126 - 953586-953637,953890-954554 28 6.0
11_04_0166 + 14317129-14317962,14318042-14318809,14319008-143197... 28 6.0
11_01_0116 - 896184-896849 28 6.0
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 28 6.0
05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778 28 6.0
12_02_0163 + 14704475-14704499,14704530-14704597,14704813-147048... 28 8.0
09_02_0516 - 10136400-10136516,10136606-10136894,10137578-101381... 28 8.0
08_01_0964 - 9723536-9723672,9723683-9723767,9723818-9723886,972... 28 8.0
04_04_1689 + 35379627-35379746,35379823-35380344,35380428-353805... 28 8.0
03_02_0329 - 7498951-7498989,7499219-7499507,7499590-7499760,749... 28 8.0
01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,467... 28 8.0
>10_05_0088 - 9037516-9037997,9038171-9038513,9039512-9039787
Length = 366
Score = 31.1 bits (67), Expect = 0.86
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = -2
Query: 369 LDIRHRAFPFIGKRSGRPPRRDTHAPTSARHQDR 268
++IR A P SGRPPRR T AP++ QDR
Sbjct: 291 IEIRITARPTTAP-SGRPPRRPTFAPSAPIAQDR 323
>04_01_0580 -
7539208-7539328,7539409-7539579,7539658-7540024,
7540093-7540516
Length = 360
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = -2
Query: 369 LDIRHRAFPFIGKRSGRPPRRDTHAPTSARHQDR 268
++IR RA P SGRPP+R AP + QDR
Sbjct: 74 IEIRDRARPTTAP-SGRPPKRPDSAPLAPPAQDR 106
>02_04_0332 + 22093387-22093550,22093753-22094056
Length = 155
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 269 RSWCRADVGAWVS-RRGGLPERFPMNGKALC 358
R W R VGAW+ RRG LP P G LC
Sbjct: 53 RRWRRTAVGAWLPLRRGSLPSS-PFAGVPLC 82
>11_03_0217 -
11828305-11828343,11828449-11828487,11828573-11828861,
11828944-11829114,11829193-11830079,11830167-11830346,
11830692-11831399
Length = 770
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2
Query: 369 LDIRHRAFPFIGKRSGRPPRRDTHAPTSARHQDR 268
++IR A P I GRPP+R AP++ QDR
Sbjct: 381 IEIRVTARPTIAP-GGRPPKRPASAPSAPPAQDR 413
>05_07_0317 -
29193940-29193978,29194208-29194496,29194579-29194749,
29194829-29195715,29195803-29196249,29196328-29197056
Length = 853
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2
Query: 369 LDIRHRAFPFIGKRSGRPPRRDTHAPTSARHQDR 268
++IR A P GRPP+R T AP++ QDR
Sbjct: 477 IEIRVTARPTTAP-GGRPPKRPTSAPSAPPAQDR 509
>12_01_0126 - 953586-953637,953890-954554
Length = 238
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = -1
Query: 316 AAPRHPRADVSATPGPRV*WEIVFLQHPQVESPPLTLVCWRHSV 185
AA HP +V+A P P IV Q + E PP+ L WR S+
Sbjct: 2 AAKVHP--NVAAAPQPPCISSIVSQQQEE-EEPPVVLTVWRKSL 42
>11_04_0166 + 14317129-14317962,14318042-14318809,14319008-14319740,
14353399-14353892,14353971-14354417,14354505-14355110,
14355204-14355391,14355470-14355640,14355723-14355810
Length = 1442
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2
Query: 369 LDIRHRAFPFIGKRSGRPPRRDTHAPTSARHQDR 268
++IR A P SGRPP+R AP++ QDR
Sbjct: 1177 IEIRVTARPTTAP-SGRPPKRPASAPSALPAQDR 1209
>11_01_0116 - 896184-896849
Length = 221
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = -1
Query: 316 AAPRHPRADVSATPGPRV*WEIVFLQHPQVESPPLTLVCWRHSV 185
AA HP +V+A P P IV Q + E PP+ L WR S+
Sbjct: 2 AAKVHP--NVAAAPQPPCISSIVSQQQEE-EEPPVVLTVWRKSL 42
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 345 PFIGKRSGRPPRRDTHAPTSARHQDRGSNGRSS 247
PF+ R RPPRR +PT ++ GS SS
Sbjct: 127 PFL--RQSRPPRRGAASPTRSKRDGSGSGEGSS 157
>05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778
Length = 1104
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -2
Query: 492 WI*FLDIFSMKSCSARALASLLRKS*CSSNPLFGTLEANMSLDIRHRAF 346
W+ D+F+ K + + S+ RK SSN L L+ + +R R F
Sbjct: 233 WVCISDLFNKKRITKEIIESITRKEYKSSNSL-DALQVELRKQLRRRKF 280
>12_02_0163 +
14704475-14704499,14704530-14704597,14704813-14704881,
14704932-14705016,14705027-14705163
Length = 127
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 233 RVLQEDDLPLDPRSWCRADVGAWVSRRGGLPERFPMN 343
R L E D LD R++ R WV GG+ ER MN
Sbjct: 69 RYLYELDSHLDIRTYERTYGLVWVLETGGVAERLMMN 105
>09_02_0516 -
10136400-10136516,10136606-10136894,10137578-10138110,
10138719-10138892,10138898-10138903
Length = 372
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -2
Query: 369 LDIRHRAFPFIGKRSGRPPRRDTHAPTSARHQDR 268
++IR A P I + GRPP+R + +P++ QDR
Sbjct: 145 IEIRVTARPTI-EPGGRPPKRPSSSPSAPPAQDR 177
>08_01_0964 -
9723536-9723672,9723683-9723767,9723818-9723886,
9724259-9724306
Length = 112
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 233 RVLQEDDLPLDPRSWCRADVGAWVSRRGGLPERFPMN 343
R L E D LD R++ R WV GG+ ER MN
Sbjct: 54 RYLYELDSHLDIRTYERTYGLVWVLETGGVAERLMMN 90
>04_04_1689 +
35379627-35379746,35379823-35380344,35380428-35380526,
35380608-35380979
Length = 370
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -1
Query: 682 P*AHLLVKVTLK*PYKTISLGRKKIISYYIEN 587
P HLL ++ + PYK IS+G K ++++N
Sbjct: 232 PCRHLLSRIFVANPYKRISMGEIKSHPWFLKN 263
>03_02_0329 -
7498951-7498989,7499219-7499507,7499590-7499760,
7499839-7500345,7500347-7500726,7500814-7501266
Length = 612
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -2
Query: 369 LDIRHRAFPFIGKRSGRPPRRDTHAPTSARHQDRGSNGRSSSCNTLK 229
++IR A P GRPP+R AP++ QDR + +T +
Sbjct: 236 IEIRVTARPTTAP-GGRPPKRPASAPSAPHAQDRHAQSYDVQLHTTR 281
>01_01_0623 +
4672581-4673413,4674274-4674389,4674694-4674902,
4675953-4676072,4676185-4676313,4676394-4676442,
4676899-4676970,4677574-4677707,4677798-4677915,
4678332-4678541,4678630-4678942,4679539-4679632,
4679854-4679962,4680243-4680514,4680597-4680724,
4680832-4681066,4681570-4681758,4681845-4682128,
4682218-4682398,4682486-4682728,4682904-4682986,
4683119-4683227,4687996-4688091,4688675-4688764,
4688881-4689129,4689233-4689412,4690179-4690250,
4691385-4691474,4691605-4691705,4691794-4691959
Length = 1757
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -2
Query: 327 SGRPPRRDTHAPTSARHQDRGSNGRSSSC 241
+G PP R + PT G GR +SC
Sbjct: 162 AGDPPERTSGVPTGTHGDGGGHGGRGASC 190
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,182,592
Number of Sequences: 37544
Number of extensions: 422621
Number of successful extensions: 1317
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1317
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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